Sequence of DPV Cocksfoot mottle virus

Cocksfoot mottle virus RNA representing defective interfering RNA type 1

ACC No: AJ243470

Dated: 2000-01-07 | Length: 983 | CRC: -1839802784

                !!NA_SEQUENCE 1.0
ID   CMO243470  standard; RNA; VRL; 983 BP.
XX
AC   AJ243470;
XX
SV   AJ243470.1
XX
DT   07-JAN-2000 (Rel. 62, Created)
DT   07-JAN-2000 (Rel. 62, Last updated, Version 1)
XX
DE   Cocksfoot mottle virus RNA representing defective interfering RNA type 1
XX
KW   coat protein; cp gene; defective interfering rna.
XX
OS   cocksfoot mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN   [1]
RP   1-983
RA   Makinen K.M.;
RT   ;
RL   Submitted (17-JUN-1999) to the EMBL/GenBank/DDBJ databases.
RL   Makinen K.M., Institute of Biotechnology, University of Helsinki, P.O.Box
RL   56, Viikinkaari9, FIN-00014 University of Helsinki, FINLAND.
XX
RN   [2]
RA   Makinen K., Generozov E., Arshava N., Kaloshin A., MOrozov S.Y.,
RA   Zavriev S.;
RT   "Characterization of defective interfering-like RNAs in cocksfoot mottle
RT   sobemovirus.";
RL   Unpublished.
XX
DR   SPTREMBL; Q9PWT2; Q9PWT2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .983
FT                   /country="Russia"
FT                   /db_xref="taxon:40979"
FT                   /note="DI-RNA type 1"
FT                   /virion
FT                   /organism="cocksfoot mottle virus"
FT                   /isolate="Russian"
FT                   /specific_host="Dactylis glomerata"
FT                   /lab_host="Avena sativa, Hordeum vulgare"
FT   5'UTR           1. .91
FT   CDS             92. .757
FT                   /db_xref="SPTREMBL:Q9PWT2"
FT                   /note="putative truncated coat protein"
FT                   /gene="CP"
FT                   /protein_id="CAB64891.1"
FT                   /translation="MEPVSRPLNPPAAVGSTLKAGRGKTAGVSDWFDTGMITSYLGGFQ
FT                   RTAGTTDSQVFIVSPAALDRVGTIAKAYALWRPKHWEIVYLPRCSTQTDGSIEMGFLLD
FT                   YADSVPTNTRTMASSTSFTTSNVWGGGDGSSLLHTSMKSMGNAVTSALPCDEFSNKWFK
FT                   LSWSTPEESENAHLTDTYVPARFVVRSDFPVVTADQPGHLWLRSRILLKGSVSPSTNL"
FT   3'UTR           758. .983
XX
SQ   Sequence 983 BP; 212 A; 257 C; 270 G; 244 T; 0 other;

AJ243470  Length: 983  December 21, 2001 15:38  Type: N  Check: 6788  ..

       1  ataatagtgc gaagaaagac acactgttat cgttccaaaa cccagagctc
      51  agcagcagcc tgggggccgc cgcaggaggc gtggccggtc gatggagcca
     101  gtctctcgac ctttgaaccc tccagcggcg gttggttcca ccttgaaggc
     151  tggtagaggc aagactgctg gtgtgagtga ctggtttgat accggtatga
     201  tcaccagcta tctgggcggt ttccagcgca cagctgggac cactgactcc
     251  caagttttca ttgtgtcacc cgctgctttg gaccgtgttg gaaccatagc
     301  caaggcgtat gcgttgtgga gacctaagca ttgggaaatc gtgtatctcc
     351  ccagatgttc tactcagaca gatgggtcga ttgaaatggg atttctctta
     401  gattatgcgg atagcgtccc aaccaacacc cgaactatgg cctcctctac
     451  ctccttcaca acttcaaacg tgtggggagg tggggatggc agcagcttgc
     501  tgcacacgtc catgaagtcc atgggcaacg ctgttacgag tgctcttccc
     551  tgtgacgagt tctcgaacaa gtggtttaag ttatcttgga gcactcctga
     601  ggaatcggag aacgctcatt tgactgacac ctatgttccg gcgcgcttcg
     651  tggtgaggtc tgacttcccg gtagtcacgg ctgaccaacc tggtcatctt
     701  tggcttcggt ccaggatctt gctcaaggga tcggtttccc cttctacaaa
     751  tctgtagtta agtaccgcag ggatggcaaa cctgtataac agtgcccgcg
     801  cttggtggag tcgcgtttgt ccacttggaa atctaactcc aaagctttgc
     851  ttgaagattg acggattggt atcatctccg taaggatacc gaccactggc
     901  tgggctcgtc acccctcctt tgtgtctcac aaacgacgaa tctgcgctcg
     951  gcaaatgaca ggatcatggc cggggcaggt gct