Sequence of DPV Yam mosaic virus

Yam mosaic virus partial RNA for coat protein, isolate 174/C1,

ACC No: AJ244046

Dated: 2000-04-04 | Length: 1180 | CRC: -387493318

                !!NA_SEQUENCE 1.0
ID   YMO244046  standard; RNA; VRL; 1180 BP.
XX
AC   AJ244046;
XX
SV   AJ244046.1
XX
DT   04-APR-2000 (Rel. 63, Created)
DT   04-APR-2000 (Rel. 63, Last updated, Version 1)
XX
DE   Yam mosaic virus partial RNA for coat protein, isolate 174/C1,
XX
KW   coat protein; cp gene.
XX
OS   Yam mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Bousalem M.;
RT   ;
RL   Submitted (27-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Bousalem M., Laboratoire de Virologie des Regions Chaudes (LPRC), Institut
RL   pour la Recherche et le Developpement (IRD), LPRC/CIRAD-IRD, BP.5035,
RL   Montpellier, 34032, FRANCE.
XX
RN   [2]
RP   1-1180
RA   Bousalem M., Douzery E.J.P., Fargette D.;
RT   "High genetic diversity, distant phylogenetic relationships and
RT   intraspecies recombination events among natural populations of Yam mosaic
RT   virus: a contribution to understanding potyvirus evolution.";
RL   J. Gen. Virol. 81:243-255(2000).
XX
DR   SPTREMBL; Q9IW87; Q9IW87.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /country="Benin"
FT                   /db_xref="taxon:41460"
FT                   /virion
FT                   /organism="Yam mosaic virus"
FT                   /isolate="174/C1"
FT   CDS             <109. .>1016
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9IW87"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="CAB86241.1"
FT                   /translation="ADAQPDDGSQTIDAGENTEAKNKGKDKISASSERGFSEQKFPVSR
FT                   DGNETSKAQSSGGGVVATRDRDIDAGTVGSILPRLARKSLSNKMVLPMVRGKPILNLDH
FT                   LVKYEPAQVHLSNTRATQAQFDAWYMAIKSFYEFEDEQMGMIMNGLMVWCIENGTSPNL
FT                   SGMWTMMDGAEQVEYPLKPIIENAKPTFRQIMMHFSDAAEAYIELRNSKEPYMPRYGIQ
FT                   RNLRDYSLVRYAFDFLEITSKTPVRAREAHHQMKAAAIGNKVYKMFGFDGKVGSQEEDT
FT                   ERHAAGDVTKDMHSLLGMRGM"
XX
SQ   Sequence 1180 BP; 372 A; 207 C; 295 G; 306 T; 0 other;

AJ244046  Length: 1180  December 21, 2001 15:38  Type: N  Check: 5500  ..

       1  gctctctaca ctaatcaagc tccaactagt ggtgaattgg ctaattacgt
      51  gcaacatata atggaagaat tttgtactga tgatgaggtg tgctacgtta
     101  gccaccaagc agacgcacaa ccagatgatg gtagtcaaac tattgatgct
     151  ggagaaaaca ctgaagcaaa gaataaagga aaagacaaaa tcagcgcatc
     201  atccgagcgt ggttttagtg aacagaagtt ccctgtctcg agagatggga
     251  atgagacaag taaagcacaa tcaagcggtg gtggagttgt agcaacccgt
     301  gacagagaca ttgatgctgg aactgttgga tctatcttgc ctagattggc
     351  taggaaaagt cttagcaata agatggtact acccatggta cgaggaaagc
     401  cgatactgaa tctcgatcat cttgttaaat atgaacctgc acaagttcat
     451  ttatcaaaca cacgagctac acaagcacag tttgacgcat ggtacatggc
     501  aatcaaaagt ttttacgagt ttgaggatga acagatgggt atgattatga
     551  atggactgat ggtgtggtgc atagagaatg gcacttcacc aaatttatcc
     601  gggatgtgga caatgatgga cggtgcggag caagtggaat acccattgaa
     651  accgatcata gaaaatgcca aacccacatt tcgtcagata atgatgcact
     701  tcagtgatgc agctgaagca tacattgaat tgcggaactc aaaagaaccg
     751  tatatgcccc gatacggtat tcagcgcaac ttgagggatt actcattggt
     801  tagatatgcg tttgacttct tagagattac ctctaagact ccagttcgag
     851  cgcgtgaagc ccaccatcag atgaaggcag cagctattgg aaataaggtt
     901  tataaaatgt ttggatttga tggcaaagtg ggttcccagg aagaggatac
     951  agagagacac gctgcaggtg atgtcactaa agacatgcac agccttttgg
    1001  gcatgagagg tatgtagagt gttgattata tatcagatat atatataatt
    1051  ctgttatgcc tacctaatat atgttggttg caagcattct gtgtttgtga
    1101  gaagacgtat tctaatgttg cattttggag aaactcaaga gtgtctatga
    1151  catggaggtc tctttgatgt ggcggaggag