Sequence of DPV Yam mosaic virus

Yam mosaic virus partial RNA for coat protein, isolate POGNON/C1

ACC No: AJ244064

Dated: 2000-04-04 | Length: 1180 | CRC: -1589728774

                !!NA_SEQUENCE 1.0
ID   YMO244064  standard; RNA; VRL; 1180 BP.
XX
AC   AJ244064;
XX
SV   AJ244064.1
XX
DT   04-APR-2000 (Rel. 63, Created)
DT   04-APR-2000 (Rel. 63, Last updated, Version 1)
XX
DE   Yam mosaic virus partial RNA for coat protein, isolate POGNON/C1
XX
KW   coat protein; cp gene.
XX
OS   Yam mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Bousalem M.;
RT   ;
RL   Submitted (27-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Bousalem M., Laboratoire de Virologie des Regions Chaudes (LPRC), Institut
RL   pour la Recherche et le Developpement (IRD), LPRC/CIRAD-IRD, BP.5035,
RL   Montpellier, 34032, FRANCE.
XX
RN   [2]
RP   1-1180
RA   Bousalem M., Douzery E.J.P., Fargette D.;
RT   "High genetic diversity, distant phylogenetic relationships and
RT   intraspecies recombination events among natural populations of Yam mosaic
RT   virus: a contribution to understanding potyvirus evolution.";
RL   J. Gen. Virol. 81:243-255(2000).
XX
DR   SPTREMBL; Q9IW69; Q9IW69.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /country="France:Guadeloupe"
FT                   /db_xref="taxon:41460"
FT                   /virion
FT                   /organism="Yam mosaic virus"
FT                   /isolate="POGNON/C1"
FT   CDS             <109. .>1016
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9IW69"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="CAB86259.1"
FT                   /translation="ADTQPDDEGKTIDAGKSTGSRDKEKGVTNASSGYSDAGKKTLTPE
FT                   DRNETNKAQSSGDGILATRDKDIDAGTVGSVLPRLARKNFSNKMVLPMVRGKSILNLDH
FT                   LVKYEPAQVFLSNTRATQAQFDTWYMAIKSFYELEDEQIGMIMNGLMVWCIENGTSPNL
FT                   SGMWTMMDGGEQVEYPLKPIIENAKPTFRQIMMHFSDAAEAYIELRNSKEPYMPRYGIQ
FT                   RNLRDYSLARYAFDFLEITSKTPVRAREAHHQMKAAAIGNKVYKMFGFDGKVGSQEEDT
FT                   ERHAAGDVTKDMHSLLGMRGM"
XX
SQ   Sequence 1180 BP; 381 A; 206 C; 293 G; 300 T; 0 other;

AJ244064  Length: 1180  December 21, 2001 15:38  Type: N  Check: 4631  ..

       1  gctctctata ccaatcaagt tccaactaac aacgaattgt ctaaatatgt
      51  gcaacatata atggaggatt tttgcaatga agatgaaata tgctacgtaa
     101  gccaccaggc ggatacacag ccagatgatg aaggcaagac tattgatgct
     151  ggaaaaagta ctggatctag agataaggaa aagggtgtga ctaatgcttc
     201  atctggatac agtgacgctg gaaagaaaac tctaacacca gaagacagga
     251  atgagacaaa taaagcacaa tcgagcggtg atggaattct agcaacgcgt
     301  gataaagata ttgatgctgg aactgttgga tcggttcttc ctagactggc
     351  taggaaaaat ttcagtaata agatggtttt gcctatggtt cgggggaagt
     401  cgatactgaa tcttgaccat cttgtgaagt atgagcccgc tcaagttttc
     451  ctatcaaata cacgagctac acaagcacag tttgatacat ggtacatggc
     501  aatcaaaagt ttttatgaac tcgaagatga gcagataggt atgatcatga
     551  atggactgat ggtgtggtgc atagaaaatg gtacttcacc aaatttatcc
     601  ggaatgtgga caatgatgga cggcggggag caagtggaat atccattgaa
     651  gccgatcata gaaaatgcca aacccacatt tcgtcagata atgatgcatt
     701  tcagtgacgc agctgaagcg tacattgaat tgcggaactc aaaagaaccg
     751  tatatgcccc gatacggtat tcagcgcaac ttaagggatt attcactggc
     801  aaggtacgcg ttcgatttct tagagatcac ctctaaaact ccagttcgag
     851  cgcgtgaagc acaccatcag atgaaggcag cagcaattgg aaacaaggtt
     901  tacaagatgt ttggatttga tggcaaagtg ggctcccagg aagaggacac
     951  agaaaggcac gctgcgggtg atgtcacaaa agacatgcac agcctcttgg
    1001  gcatgagagg tatgtagagt gttaattata tatcagttat atatataatt
    1051  ctgttatgcc tacctaatat atgttggttg caaacatttt gtgtttgtga
    1101  gaagacgtat tctaaagtta cattttggag gagctcaaga gtgtctatga
    1151  cacggaggtc tctttgatgt ggcggaggag