Sequence of DPV Infectious salmon anemia virus

Infectious salmon anemia virus (ISAV) NP gene for nucleoprotein, genomic RNA, isolate 390/98

ACC No: AJ276858

Dated: 2001-03-17 | Length: 2069 | CRC: 854158587

                !!NA_SEQUENCE 1.0
ID   ISA276858  standard; genomic RNA; VRL; 2069 BP.
XX
AC   AJ276858;
XX
SV   AJ276858.1
XX
DT   17-MAR-2001 (Rel. 67, Created)
DT   17-MAR-2001 (Rel. 67, Last updated, Version 1)
XX
DE   Infectious salmon anemia virus (ISAV) NP gene for nucleoprotein, genomic
DE   RNA, isolate 390/98
XX
KW   NP gene; nucleoprotein.
XX
OS   Infectious salmon anemia virus
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC   unclassified Orthomyxoviridae.
XX
RN   [1]
RP   1-2069
RA   Snow M.;
RT   ;
RL   Submitted (22-MAR-2000) to the EMBL/GenBank/DDBJ databases.
RL   Snow M., Aquaculture and Animal Health, FRS Marine Laboratory, PO Box 101
RL   Victoria Road, AB11 9DB, UNITED KINGDOM.
XX
RN   [2]
RX   MEDLINE; 21127304.
RX   PUBMED; 11226579.
RA   Snow M., Cunningham C.;
RT   "Characterisation of the putative nucleoprotein gene of infectious salmon
RT   anaemia virus (ISAV)";
RL   Virus Res. 74(1-2):111-118(2001).
XX
RN   [3]
RP   1-2069
RA   Snow M.;
RT   ;
RL   Submitted (13-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Snow M., Aquaculture and Animal Health, FRS Marine Laboratory, PO Box 101
RL   Victoria Road, AB11 9DB, UNITED KINGDOM.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2069
FT                   /country="United Kingdom:W Scotland"
FT                   /db_xref="taxon:55987"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Infectious salmon anemia virus"
FT                   /isolate="390/98"
FT                   /specific_host="Salmo salar (Salmon)"
FT   CDS             63. .1913
FT                   /db_xref="GOA:Q98VU1"
FT                   /db_xref="UniProt/TrEMBL:Q98VU1"
FT                   /transl_table=1
FT                   /gene="NP"
FT                   /product="nucleoprotein (NP)"
FT                   /function="Binds genomic RNA in nucleocapsid"
FT                   /protein_id="CAC34559.1"
FT                   /translation="MADKGMTYSFDVRDNTLVVRRSTATKSGIKISYREDRGTSLLQKA
FT                   FAGTDDEFWLELDQDVYVDKRIRKFLEEEKMKDMSPRVSGSVAAAIERSVEFDNFSKEA
FT                   AANIEMSGEDEEEAGGSGMVDNKRRNKGVSNMAYNLSLFIGMVFPAITTFFSAILSEGE
FT                   MSIWQNGQAIMRILALADEDGKRQTRTGGQRVDMADVTKLNVVTANGKVKQVEVNLNDL
FT                   KAAFRQSRPKRSDYRKGQGSKATESSISNQCMALIMKSVLSADQLFAPGVKMMRTNGFN
FT                   ASYTTLAEGANIPSKYLRHMRNCGGVALDLMGMKRIKNSPEGAKSKIFSIIQKKVRGRC
FT                   RTEEQRLLTSALKISDGENKFQRIMDTLCTSFLIDPPRTTKCFIPPISSLLMYIQDGNS
FT                   VLAMDFMKNGEDACRICREAKLKVGVNGTFTMSVARTCVAVSMVATAFCSADIIENAVP
FT                   GSERYRSNIKANTTKPKKDSTYTIQGLRLSNVKYEARPETSQSNTDRSWQVNVTDSFGG
FT                   LAVFNQGAIREMLGDGTSETTSVNVRALVKRILKSASERSARAVKTFMVGEQGKSAIVI
FT                   SGVGLFSIDFEGVEEAERITDMTPDIEFDEDDEEEEDTDI"
XX
SQ   Sequence 2069 BP; 691 A; 378 C; 544 G; 456 T; 0 other;

AJ276858  Length: 2069  October 13, 2004 17:42  Type: N  Check: 6612  ..

       1  acaacgctgg attaggcaaa gattgctcaa atcccaaaaa taatacagaa
      51  aacgtataag agatggccga taaaggtatg acttattctt ttgatgtcag
     101  agacaacacc ttggttgtaa gaagatctac cgctactaaa agtggtataa
     151  agatctccta cagagaagat agaggtactt cacttctcca aaaggccttt
     201  gcggggacag atgatgaatt ctggctggag ctggatcaag acgtgtacgt
     251  agacaagagg attagaaagt tccttgagga agagaagatg aaggacatga
     301  gtcccagagt gtctggttct gtcgctgcag caatcgaaag gtcagtggag
     351  ttcgacaact tttcaaagga agcagctgcg aacatcgaga tgtcaggaga
     401  ggacgaggaa gaagcaggtg ggagtggcat ggttgacaac aagaggagga
     451  acaaaggggt ctccaacatg gcgtacaacc tttcactgtt cattggaatg
     501  gtcttccctg caatcaccac gttcttcagc gcaatcctgt cagaaggtga
     551  aatgagcatc tggcaaaacg ggcaggcaat catgaggatt ctcgctttgg
     601  ctgatgaaga cggaaagagg caaacgagaa caggcggaca gagagtggac
     651  atggcagatg ttaccaagct aaacgtggtg acagcaaacg ggaaagtcaa
     701  gcaggttgaa gtcaatttga atgacctgaa ggcagctttc agacagagca
     751  gacccaaaag gtcagactac aggaaagggc aaggatcaaa ggcaactgaa
     801  tcaagtattt ccaaccagtg catggctctg attatgaagt cagtgttgtc
     851  agcagaccag ctgtttgcac caggtgtgaa gatgatgagg accaatggtt
     901  tcaacgcatc atacactaca ctagcagaag gagccaacat tccaagcaag
     951  tacctaaggc acatgaggaa ctgcggagga gttgctctag atcttatggg
    1001  gatgaagaga atcaagaatt caccggaagg agctaagtct aagatctttt
    1051  ctatcatcca gaagaaagtc aggggaaggt gtcgcactga ggagcaacgg
    1101  ctgctgacta gtgcattgaa gatcagtgat ggcgagaaca agttccaaag
    1151  gatcatggac actctgtgca caagctttct gattgaccca cctagaacaa
    1201  ccaaatgctt cattccacct atctctagtc tcttgatgta cattcaggac
    1251  ggaaattcag tgttggcaat ggacttcatg aagaacggag aagatgcttg
    1301  caggatctgc agagaggcaa agctgaaggt tggagtgaac ggcacattta
    1351  caatgtctgt ggctagaaca tgtgtagctg tgtcaatggt tgcaacagca
    1401  ttctgttcag cagatatcat cgagaatgca gttcctggct cggaaaggta
    1451  caggtcaaac atcaaggcaa acacaaccaa acctaagaag gactcaacat
    1501  acacaatcca agggctgagg ctgtccaatg tgaagtacga ggcaagacct
    1551  gaaacatctc aaagcaacac agatcgaagc tggcaagtga atgtcacaga
    1601  cagtttcgga gggctagcgg ttttcaacca aggcgctatc agggagatgc
    1651  ttggagatgg aacatctgag acaacaagtg tgaatgtcag ggctctggta
    1701  aagaggatct tgaaatctgc ttcagaaaga agcgcaagag ctgtaaaaac
    1751  attcatggtt ggagaacaag ggaagtctgc aattgttatc tcaggagtgg
    1801  ggcttttctc tattgacttt gaaggggttg aggaggcaga gaggattact
    1851  gacatgacac ctgacatcga gttcgatgag gacgatgagg aggaggaaga
    1901  cactgacatt tgaaactgca ctatgtgaat taactagtta ctctatgtta
    1951  tgatgcactt taatgaaact atgatataat tgggtttggg tattattatt
    2001  aaaattaaat tgatacggta ttgacgatat ttacaaataa agaaaaaaaa
    2051  aaaaaaaaaa aaaaaaaaa