Sequence of DPV Infectious salmon anemia virus
Infectious salmon anemia virus mRNA for haemagglutinin protein (HA gene), isolate 390/98
ACC No: AJ276859
Dated: 2003-04-24 | Length: 1326 | CRC: -1042953046
!!NA_SEQUENCE 1.0
ID ISA276859 standard; mRNA; VRL; 1326 BP.
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AC AJ276859;
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SV AJ276859.1
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DT 22-MAY-2001 (Rel. 67, Created)
DT 24-APR-2003 (Rel. 75, Last updated, Version 4)
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DE Infectious salmon anemia virus mRNA for haemagglutinin protein (HA gene),
DE isolate 390/98
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KW HA gene; haemagglutinin protein.
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OS Infectious salmon anemia virus
OC Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC unclassified Orthomyxoviridae.
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RN [1]
RC Revised by [3]
RA Snow M.;
RT ;
RL Submitted (22-MAR-2000) to the EMBL/GenBank/DDBJ databases.
RL Snow M., Aquaculture and Animal Health, FRS Marine Laboratory, PO Box 101
RL Victoria Road, AB11 9DB, UNITED KINGDOM.
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RN [2]
RX MEDLINE; 21232513.
RX PUBMED; 11333916.
RA Rimstad E., Mjaaland S., Snow M., Mikalsen A.B., Cunningham C.O.;
RT "Characterization of the infectious salmon anemia virus genomic segment
RT that encodes the putative hemagglutinin";
RL J. Virol. 75(11):5352-5356(2001).
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RN [3]
RP 1-1326
RA Snow M.;
RT ;
RL Submitted (13-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL Snow M., Aquaculture and Animal Health, FRS Marine Laboratory, PO Box 101
RL Victoria Road, AB11 9DB, UNITED KINGDOM.
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FH Key Location/Qualifiers
FH
FT source 1. .1326
FT /country="United Kingdom:W Scotland"
FT /db_xref="taxon:55987"
FT /mol_type="mRNA"
FT /virion
FT /organism="Infectious salmon anemia virus"
FT /isolate="390/98"
FT /specific_host="Salmo salar (Salmon)"
FT /segment="6"
FT CDS 20. .1186
FT /db_xref="UniProt/TrEMBL:Q911Y4"
FT /transl_table=1
FT /function="surface protein"
FT /gene="HA"
FT /product="haemagglutinin protein"
FT /protein_id="CAC39249.1"
FT /translation="MARFIILFLLLAPVYSRLCLRNYPDTTWIGDSRSDQSRVNPQSLD
FT LVTEFKGVLQAKNGNGLLKQMSGRFPSDWYTPTTKYRILYLGTNDCTDGPTDMIIPTSM
FT TLDNAARELYLGACRGDVRVTPTFVGAAIVGLVGRTDAITGFSVKVLTFSSPTIVVVGL
FT NGMSGIYKVCIAATSGNVGGVTLINGCGYFNTPLRFDNFQGQIYVSDTFEVRGTKNKCV
FT LLRSSSDKPLCSHIMRNVELDEYVDTPNTGGVYPSDGFDSLHGSASVRTFLTDALTCPD
FT IDWSRIDAASCEYDSCPKMVKDFDQTSLGNTDTLIMREVALHKEMISKLQRNITDVKTS
FT VLSNIFISMGVAGFGIALFLAGWKACIWIAVXMYKSRGRIPPSNLSFA"
XX
SQ Sequence 1326 BP; 388 A; 244 C; 326 G; 367 T; 1 other;
AJ276859 Length: 1326 October 13, 2004 17:42 Type: N Check: 5783 ..
1 ggcatcatga cttgcaaaga tggcacgatt cataatttta ttcctactgt
51 tggcgcctgt ttacagtcgt ctatgtctta gaaactaccc tgacaccacc
101 tggataggtg actctcgaag cgatcagtcc agagtgaatc cacagtcttt
151 ggatctggtg actgagttca agggggtgct gcaggccaaa aacggaaatg
201 gacttttgaa gcagatgagt ggaaggtttc caagtgactg gtacacacct
251 actacaaagt accggatcct atacttggga accaatgact gcactgacgg
301 acctactgac atgatcatcc caacttcgat gacactggac aacgcggcaa
351 gggagctgta cctgggagca tgcaggggag acgtgagagt gacgcctaca
401 tttgtgggag cagcaattgt tggacttgtt ggacgaacag acgcaattac
451 cggtttttcg gtgaaggtgt tgactttcag cagccctaca attgtagtgg
501 tgggattgaa tggaatgtcc ggaatctaca aggtctgcat tgcagcaaca
551 tctgggaatg tgggaggagt gacactgatc aacggatgcg gatatttcaa
601 cacacctttg aggtttgaca atttccaagg acaaatctac gtgtcagaca
651 cctttgaagt gaggggaacc aaaaacaagt gtgttctgct aagatcttct
701 agtgataagc ctttgtgttc acacatcatg aggaacgttg agctagatga
751 gtatgtagac acaccaaata cagggggtgt ttatccttct gatggttttg
801 attcactaca tggttcagct tccgttagaa cgttcctcac tgatgcattg
851 acatgcccag acattgactg gagtagaatt gatgctgctt cgtgtgaata
901 tgacagctgc cctaagatgg ttaaagattt tgaccagaca agcttaggta
951 acacagacac acttatcatg agggaggtag cattgcacaa ggagatgatc
1001 agtaaacttc agaggaacat cacagatgta aaaacatctg tgttgagcaa
1051 catcttcatt tctatgggtg tagcaggttt tgggattgct ctgttcctag
1101 caggttggaa ggcatgtatt tggattgcag tattnatgta caagtctaga
1151 ggtagaattc caccatcgaa cctgtctttt gcttgattat gaaagaaaga
1201 caactatgtt aaaagttaat gagtgtattc taatgtgatt ttaattttaa
1251 agatgtatgt caaattattt ttggttgaag acgttcttga tgttgtacgt
1301 ttccaaaaaa aaaaaaaaaa aaaaaa