Sequence of DPV Shallot latent virus

Garlic latent virus ORF1 partial genomic RNA, isolate YH2

ACC No: AJ292227

Dated: 2002-02-06 | Length: 1810 | CRC: 1307260053

                !!NA_SEQUENCE 1.0
ID   GLA292227  standard; RNA; VRL; 1810 BP.
XX
AC   AJ292227;
XX
SV   AJ292227.1
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   06-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Garlic latent virus ORF1 partial genomic RNA, isolate YH2
XX
KW   coat protein; nucleic acid binding protein; ORF1; ORF2; ORF3; ORF4; ORF5;
KW   ORF6; RNA-dependent RNA-polymerase; TGB1 protein; TGB2 protein;
KW   TGB3 protein.
XX
OS   garlic latent virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Carlavirus.
XX
RN   [1]
RC   Revised by [3]
RA   Adams M.J.;
RT   ;
RL   Submitted (24-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Molecular characterisation of a complex mixture of viruses in garlic with
RT   mosaic symptoms in China";
RL   Arch. Virol. 146:1841-1853(2001).
XX
RN   [3]
RP   1-1810
RA   Adams M.J.;
RT   ;
RL   Submitted (02-FEB-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1810
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12458"
FT                   /virion
FT                   /organism="garlic latent virus"
FT                   /isolate="YH2"
FT                   /specific_host="garlic"
FT   CDS             1. .333
FT                   /note="ORF3"
FT                   /product="TGB2 protein"
FT                   /protein_id="CAC83688.1"
FT                   /translation="MPLRPPPDHTRTYFAGAVGVCVAICLYTLTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKRIFYNSPARKFPSSNLLSGLSAPLCLLVLIIGLICVSEKIRPSTSTRVS
FT                   CRCNHS"
FT   CDS             312. .506
FT                   /note="ORF4"
FT                   /product="TGB3 protein"
FT                   /protein_id="CAC83689.1"
FT                   /translation="MQVQPLVVLTISLLVTLLLCYSLENLKSEKCTVVITGESVKIIGC
FT                   EFTSDFIDFAKQAKPFGSL"
FT   CDS             532. .1425
FT                   /note="ORF5"
FT                   /product="coat protein"
FT                   /protein_id="CAC83690.1"
FT                   /translation="MARDEEIISEIQKLPTRDPASIPESDRSKAVNDVGVMEREGFEAV
FT                   LKRSENRFNKLKEKCMSELSSVNVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEFSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNAQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
FT   CDS             1419. .1715
FT                   /note="ORF6"
FT                   /product="nucleic-acid binding protein"
FT                   /protein_id="CAC83691.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDVIDIIVNKIVCERAGASSY
FT                   ARARRAKSIGRCPRCYRCSPGFTFTKNCDTRTCVPGISYNDKVKAFIVDGVTM"
XX
SQ   Sequence 1810 BP; 514 A; 369 C; 420 G; 507 T; 0 other;

AJ292227  Length: 1810  February 12, 2002 17:24  Type: N  Check: 7587  ..

       1  atgccactta gaccaccacc tgatcacaca agaacttact ttgctggtgc
      51  agttggtgtt tgtgtcgcta tttgtttgta cacattgaca cgttcaacat
     101  tgcctcacgt gggagataac atacatagtt tacctcacgg tggttgttat
     151  caagacggca caaaacgaat tttttacaat agtcccgcgc gaaaattccc
     201  aagcagtaat ttactatctg gtttatccgc tcctttgtgc ttgcttgtcc
     251  taatcattgg cttaatttgc gtgagtgaga agatcagacc aagtactagc
     301  acaagagttt catgcaggtg caaccactcg tagtgctgac gatcagcttg
     351  ctggttactt tactcctctg ttacagtctc gagaatctta agtccgagaa
     401  gtgtactgtt gttattacgg gagaatcagt caagataatt ggttgtgaat
     451  tcacgagtga ctttattgat ttcgctaaac aagctaaacc ttttggttca
     501  ctttaggttt acagcgcttg gaattgatat tatggctaga gacgaagaaa
     551  tcattagtga aatacagaaa ctacctactc gcgacccggc ctcaattccg
     601  gagagtgatc gtagtaaggc agttaatgac gtcggcgtta tggaaagaga
     651  aggttttgag gccgtcctca aacgaagcga gaatcgattc aataaactga
     701  aagagaaatg catgtcagaa ttgtccagcg taaatgttac gaattgcggt
     751  tgggagtccg ggaggccgaa agctcaactt gctgacagcc tcaagggtga
     801  tgcttcaaac attttcactc gcccctccat ggatgcactc cttgtgcgca
     851  attatgcgcc tgaaagcaat aatttagcga ccgctgaaga attggcaaag
     901  atttccgcca aagtgcaagc actgggcgca cctgaagaat gtttggctga
     951  agttttctgg gacatctgta tgtattgtac aactgcggga agctctccaa
    1001  atgtgaatcc taaagggacc atatctgtgg gaggtaaggt cgtgacgaga
    1051  gatatggtag tggccgttat caaagaattt tctacattac gccaagtttg
    1101  ccgttgttat gcgccagttg tgtggaacta catgttacta aacgagcaac
    1151  cgccggctaa ttgggatgcc aaaggtttca ctgagaatac gaagtatgct
    1201  gctttcgaca cttttgatgc cgtgacaaat aaagctgcga ttcaaccgct
    1251  ggagggactc atcagagcac ccaccgacgc ggaacgaatt gctttcgcaa
    1301  cgcacaagaa gttggctctg gcaaaaaatg ctcaaaattc tcgctacgcc
    1351  aatacttctg cagaagtcac gggtggtttc ttcggctgtt tcccaaagaa
    1401  taatttccga gaaaatcgat gttgatcaag caaagaactt accgtaggtt
    1451  actgcgtgct atatttaaat tacatactaa taagaattgt gtggatgtga
    1501  tagacatcat cgtgaataaa atagtgtgtg aaagggcagg tgcctcatcc
    1551  tatgctcgcg ctcgtagagc gaagagcatc ggtaggtgcc cccgctgtta
    1601  tcggtgttca ccaggtttta ctttcactaa aaactgtgac accagaactt
    1651  gtgttcccgg cattagctat aatgataaag tcaaggcgtt tatagttgat
    1701  ggtgtaacga tgtgaaacct ttctataagc cttgagtgtt gcccataaaa
    1751  cctaaataat gtataagtgg gaacgtataa aataatttgt ttttaaaata
    1801  ttttcgcaat