Sequence of DPV Shallot latent virus
Garlic latent virus partial genomic RNA, isolate YH3
ACC No: AJ292228
Dated: 2002-02-06 | Length: 2978 | CRC: 1662583463
!!NA_SEQUENCE 1.0
ID GLA292228 standard; RNA; VRL; 2978 BP.
XX
AC AJ292228;
XX
SV AJ292228.1
XX
DT 06-FEB-2002 (Rel. 70, Created)
DT 06-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE Garlic latent virus partial genomic RNA, isolate YH3
XX
KW coat protein; nucleic acid binding protein; ORF1; ORF2; ORF3; ORF4; ORF5;
KW ORF6; RNA-dependent RNA-polymerase; TGB1 protein; TGB2 protein;
KW TGB3 protein.
XX
OS garlic latent virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Carlavirus.
XX
RN [1]
RP 1-2978
RA Adams M.J.;
RT ;
RL Submitted (24-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL AL5 2JQ, UNITED KINGDOM.
XX
RN [2]
RA Chen J., Chen J.P., Adams M.J.;
RT "Molecular characterisation of a complex mixture of viruses in garlic with
RT mosaic symptoms in China";
RL Arch. Virol. 146:1841-1853(2001).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2978
FT /country="China:Zhejiang"
FT /db_xref="taxon:12458"
FT /virion
FT /organism="garlic latent virus"
FT /isolate="YH3"
FT /specific_host="garlic"
FT CDS <1. .452
FT /codon_start=3
FT /note="ORF1"
FT /product="RNA-dependent RNA-polymerase"
FT /protein_id="CAC83692.1"
FT /translation="ANMLFTFLRYDLNGSESICFAGDDMCANRRLRVSLGHEDFLSKLK
FT LKAKVAFTKRPTFCGWNLTFFGIYKKPQLVFERMCIAKETNNLHNCIDNYAIEISFAYV
FT KGELAVCHMDEEELNAFYNCVRVVVKNKHLLKSNVRDLFENENET"
FT CDS 483. .1193
FT /note="ORF2"
FT /product="TGB1 protein"
FT /protein_id="CAC83693.1"
FT /translation="MDVLCKVLIECGFSRLEGSSNKIKVILGVPGCGKSSCIRKLINLD
FT SRFIAATFGVPDPFNVTGRRIRAVTELSAIDCTNKLLLLDEFQRGEYEELKPFALFGDV
FT CQFFDFTKAYPVADWCKTVSHRVNEKTCNYLREFGFEISSHIPGELNFGGLYSEELQGV
FT VITFCTQVSALLKAHSVEHHTVEDCRGSEFPSVSLCLSDSVVHQEDLAKFYVCATRSCG
FT NLLILTPDASKSSA"
FT CDS 1171. .1503
FT /note="ORF3"
FT /product="TGB2 protein"
FT /protein_id="CAC83694.1"
FT /translation="MPLSPPPDHTKTFFAGAVGVCIALCLYTLTRSTLPHVGDNIHSLP
FT HGGCYQDGTKRIVYNSPARNFPSSNLLLNFSSPLCLLALILGLICLSERVKSSSSTRIT
FT CSCNHS"
FT CDS 1482. .1676
FT /note="ORF4"
FT /product="TGB3 protein"
FT /protein_id="CAC83695.1"
FT /translation="MQLQPLVALVTGLLVTLLLCYSLESFKTEKCTVVITGESVKIFGC
FT EFTRDFIDFAKQAKPFGSL"
FT CDS 1702. .2595
FT /note="ORF5"
FT /product="coat protein"
FT /protein_id="CAC83696.1"
FT /translation="MANEEEELSNVQNLPTRDPGTIPERERNKAVNDVGVMEREGFEAV
FT LRRSESRFNKLKEKCMSELSSVNVTNCGWESGRPKAQLADNLKGDASNIFTRPSMDALL
FT VRNYAPESNNMATAEDLAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNAQNSRYANTSAEVTG
FT GFFGCFPKNNFRENRC"
FT CDS 2556. .2885
FT /note="alternative start"
FT /note="ORF6"
FT /product="nucleic acid binding protein"
FT /product="hypothetical protein"
FT /protein_id="CAC83697.1"
FT /translation="MFSQKQLQRESMLIKQRTYRRLLRAIFKLHTKENCVDVINIIVSK
FT IVCESAGASHYARARRAMSIGRCPRCFRCSPRFYFTKNCDTRTCSPGISYNAKVKDFIV
FT DGVTM"
FT CDS 2589. .2885
FT /note="ORF6"
FT /product="nucleic acid binding protein"
FT /protein_id="CAC83698.1"
FT /translation="MLIKQRTYRRLLRAIFKLHTKENCVDVINIIVSKIVCESAGASHY
FT ARARRAMSIGRCPRCFRCSPRFYFTKNCDTRTCSPGISYNAKVKDFIVDGVTM"
XX
SQ Sequence 2978 BP; 829 A; 599 C; 695 G; 855 T; 0 other;
AJ292228 Length: 2978 February 12, 2002 17:24 Type: N Check: 5677 ..
1 tggccaatat gcttttcacc ttcttacgat atgatttgaa tgggagtgag
51 agcatttgct ttgccggaga tgatatgtgt gctaaccgta gattacgtgt
101 gagtcttggg cacgaagatt tcttgagcaa attgaaattg aaagctaaag
151 tggcgttcac aaaaaggcct accttttgcg gttggaattt gacttttttc
201 ggcatataca aaaaacccca actggttttt gagaggatgt gcatagcaaa
251 agaaacaaat aatttgcaca actgcattga taattacgct attgagataa
301 gttttgccta tgtgaagggt gaattggccg tttgccatat ggatgaagaa
351 gagctgaatg cgttttacaa ttgtgtccgg gtcgtggtaa agaacaaaca
401 ccttttgaaa tcaaatgtcc gtgatttgtt tgaaaacgaa aatgagacgt
451 gagcttaggt gttagctgta tttttgatat atatggacgt attgtgtaaa
501 gtgttaattg agtgtggttt tagtagatta gaaggttcta gtaataaaat
551 caaagtgatc ttaggcgtac ccggttgtgg taagagtagt tgtattagga
601 agttaattaa cttagattca cgttttatcg ctgccacttt cggagtccct
651 gaccctttca acgtcacagg cagaaggatc cgtgccgtga ctgaattgtc
701 tgccattgat tgtactaata agttgctttt gcttgacgaa ttccaaaggg
751 gagaatacga ggaactgaaa cctttcgccc tctttgggga cgtgtgccaa
801 tttttcgatt tcacgaaagc ctaccctgtg gcagactggt gcaagactgt
851 gagtcatcgt gtgaacgaga aaacttgcaa ttatctacgt gagttcggtt
901 ttgaaattag ttcacatatt cctggagaat tgaatttcgg gggattatac
951 tcggaggaat tacaaggcgt tgtgatcacc ttttgcacac aagtttccgc
1001 tctcttgaaa gcacattcag ttgagcatca caccgttgaa gattgtcgtg
1051 gatccgaatt tccaagtgtg agcctctgct taagtgattc tgtggtgcat
1101 caagaggatc tggccaaatt ttacgtgtgc gcgacccgaa gctgtgggaa
1151 tctacttata ttgacaccgg atgcctctaa gtcctccgcc tgaccacaca
1201 aagactttct tcgctggtgc cgtcggagtt tgcattgccc tctgcttgta
1251 caccttgaca cgctcaactt tgccacacgt cggggataac atacatagtt
1301 tgccgcacgg tggttgttat caagacggta ccaaacggat tgtctacaac
1351 agtccagcta ggaatttccc gagtagcaac ctgcttctga acttttcctc
1401 tccactctgt ttgcttgcac taatcttggg tctgatctgt ttgagtgaga
1451 gggtcaaatc aagctctagc acacgcatca catgcagttg caaccactcg
1501 tagctctagt cactggtctc ttagtcactt tacttctctg ttacagcctt
1551 gaaagtttca aaactgaaaa gtgtactgtg gtgattactg gcgaatcggt
1601 caagatattt ggttgtgagt tcacaaggga tttcatcgac ttcgccaagc
1651 aggcaaaacc ttttggttca ctttaggtac acagcgctct aaattgatat
1701 tatggctaac gaagaagaag aactcagtaa cgtgcagaac ttgccgactc
1751 gcgatccagg gactatcccc gagcgtgaac gaaacaaagc agtgaatgat
1801 gttggtgtaa tggaacgtga aggttttgaa gccgtccttc gaaggagcga
1851 aagtaggttc aacaaactta aggagaagtg catgtctgaa ttgtctagcg
1901 tgaacgtcac gaactgcggg tgggagtctg gaagacccaa agctcagctc
1951 gctgacaatc tcaaagggga tgcttcaaat attttcacta ggccctccat
2001 ggatgccctc cttgttcgaa attacgcacc tgaaagtaac aacatggcga
2051 ctgctgagga tttggcgaaa atctcagcca aagtacaagc ccttggcgct
2101 ccagaggaat gtttagctga agtcttctgg gacatatgca tgtactgcac
2151 cactgcagga agttctccaa atgtcaatcc caaaggaact atatctgtcg
2201 ggggtaaagt tgtaactagg gacatggttg tagcagtaat caaagaatac
2251 tctacattgc gacaagtctg ccgctgctac gcgcctgtcg tttggaatta
2301 catgttgttg aatgaacaac cacccgcaaa ttgggatgca aaaggtttca
2351 ccgagaacac caaatatgca gccttcgaca ctttcgatgc ggtgacaaat
2401 aaagctgcaa tccaaccact tgagggtctg attcgggccc ccactgacgc
2451 tgaaagaatc gcatttgcaa cgcacaaaaa gttggccctg gctaagaatg
2501 ctcaaaattc tcgttatgcc aatacttctg ctgaggttac tggaggtttc
2551 ttcggatgtt ttcccaaaaa caacttcaga gagaatcgat gttgatcaaa
2601 cagagaactt accgtcgttt gttgcgtgct atatttaaat tgcatactaa
2651 ggagaattgt gttgatgtaa taaatattat tgtaagtaaa atagtgtgtg
2701 aaagtgcggg tgcttcacat tatgctcgag ctcgtagagc catgagcata
2751 ggtaggtgcc ctcgctgctt ccggtgttca cctcgttttt atttcactaa
2801 aaactgtgac actagaactt gttccccagg aattagctat aatgcaaaag
2851 tcaaggactt tatagttgat ggtgtaacaa tgtgaaaccc tactacaaac
2901 cttggctagt tgcccataaa acctaaataa tgtataagtg ggaacgtata
2951 aaataatttg tttttaaaat attttcgc