Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus partial genomic RNA for polyprotein gene, isolate YH1

ACC No: AJ292231

Dated: 2002-02-06 | Length: 1623 | CRC: -1948691988

                !!NA_SEQUENCE 1.0
ID   OYE292231  standard; RNA; VRL; 1623 BP.
XX
AC   AJ292231;
XX
SV   AJ292231.1
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   06-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Onion yellow dwarf virus partial genomic RNA for polyprotein gene, isolate
DE   YH1
XX
KW   coat protein; NIb polymerase; polyprotein.
XX
OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1623
RA   Adams M.J.;
RT   ;
RL   Submitted (24-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Molecular characterisation of a complex mixture of viruses in garlic with
RT   mosaic symptoms in China";
RL   Arch. Virol. 146:1841-1853(2001).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1623
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:43130"
FT                   /virion
FT                   /organism="Onion yellow dwarf virus"
FT                   /isolate="YH1"
FT                   /specific_host="garlic"
FT   CDS             <1. .1410
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAC83713.1"
FT                   /translation="GNNSGQPSTVVDNTVMVMLSVQYALRKCGIMLDKQTEVIKYFCNG
FT                   DDLLIAIHPDFESILDKFQQYFHELGLDYDFSSRSKSKEDVYFMSHRGLLGDGIYIPKL
FT                   DKERVVSILEWDRADKPEHRLEAICASMIEAWGYPDLLHEIRKFYQWLLEQAPYNVIAQ
FT                   NGKAPYIAETALKKLFTNIDASEVELEKYYEVYMDLENEEEIPKEVRYQAGEGEDAAAQ
FT                   SSTSQQVTKQKDKDVDTGTTGKFTIPRIKALSDKMRFPRVGKTVVLNAEHLLAYKPEQI
FT                   ELYNTRSTKQQFENWYNAVKKDYDVNDEQMKILLNGLMVWCIENGTSPNLSGNWTMMDG
FT                   DEQVEYPLAPIVDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLTELSLA
FT                   RYAFDFYEMTSKTPKRAKEAHMQMKAAAIRGATNRLFGLDGNVNTTEEDTERHTAADIN
FT                   KNQHTLLGIKM"
FT   mat_peptide     <1. .636
FT                   /product="NIb polymerase"
FT   mat_peptide     637. .1407
FT                   /product="coat protein"
XX
SQ   Sequence 1623 BP; 555 A; 263 C; 372 G; 433 T; 0 other;

AJ292231  Length: 1623  February 12, 2002 17:24  Type: N  Check: 6733  ..

       1  ggaaacaaca gtgggcagcc atctaccgtt gttgataaca cagttatggt
      51  gatgttaagt gtacaatacg ctttgcggaa atgtggcata atgttagaca
     101  aacaaaccga ggtcattaaa tacttctgta atggtgacga tttattgatt
     151  gcgatacatc cagattttga gagtatactt gacaaatttc aacagtactt
     201  tcatgaactt ggattagatt acgatttctc aagcaggagt aaatcaaaag
     251  aagatgtata ctttatgtca catagagggt tactcgggga cggaatttat
     301  ataccaaagt tggataaaga acgtgttgtt tcaatacttg agtgggatcg
     351  agctgataag cccgagcatc gattggaagc aatatgtgca tccatgattg
     401  aagcatgggg ttatccagat cttttacacg aaattcggaa attttatcaa
     451  tggctcctag aacaagctcc atataatgta atagcccaaa acgggaaggc
     501  accctatata gcggaaacag ctcttaaaaa gttgtttacc aatattgatg
     551  cgagtgaagt agaattggag aaatattacg aagtatatat ggatcttgaa
     601  aatgaagaag aaattccgaa ggaggttcga tatcaggcgg gggaaggaga
     651  agatgcagcg gcacaatcaa gcacgtcaca acaggtcaca aaacaaaagg
     701  ataaagatgt tgacactggc actactggca agtttacaat tcctagaatc
     751  aaggcactat ccgacaaaat gagatttcca agagttggta aaaccgttgt
     801  gctcaatgca gaacacttgc tagcatataa accggaacaa attgaactgt
     851  acaatacaag atcgacgaag cagcaattcg aaaattggta caatgcagta
     901  aagaaggatt atgatgttaa tgatgaacag atgaagattt tactaaatgg
     951  tttaatggtt tggtgtattg agaatggaac atctcctaat ttgtcaggaa
    1001  attggactat gatggatggt gacgagcaag tcgaatatcc actagcgcca
    1051  attgtggata acgcaaaacc aacatttaga cagataatgg cgcatttcag
    1101  tgatgcagct gaagcataca ttgaatatcg aaatgctaca gagaaatata
    1151  tgccccgata tggacttcag cgaaatttaa cagaacttag tttggcacgt
    1201  tatgcatttg acttttatga gatgacttca aagactccta aacgagcgaa
    1251  agaagcacac atgcaaatga aggcggctgc gattagaggg gcaactaatc
    1301  gtttgtttgg cctggatggt aacgtgaaca caacagaaga ggacacggaa
    1351  agacacacag ctgcggatat taataagaac cagcacacgc tgcttggtat
    1401  taaaatgtga aaccgtgttg gtgtctttag ttttatatat ttatggttat
    1451  ataaaaacgt atgtaatatg tacttctctt catttcgttt aatctgactt
    1501  cgagcaacga aatgtggtgt accactagtt gtggcgaacg atacggttaa
    1551  acatctgtga ttaatgtcga atttcatgag agtgatgtat cacgtggtga
    1601  actttggcgt gaattacgga gac