Sequence of DPV Turnip mosaic virus

Turnip mosaic virus genomic RNA for partial NIb replicase and coat protein, isolate Wenzhou

ACC No: AJ297629

Dated: 2001-08-03 | Length: 1709 | CRC: 172407683

                !!NA_SEQUENCE 1.0
ID   TMO297629  standard; RNA; VRL; 1709 BP.
XX
AC   AJ297629;
XX
SV   AJ297629.2
XX
DT   24-AUG-2000 (Rel. 64, Created)
DT   03-AUG-2001 (Rel. 68, Last updated, Version 5)
XX
DE   Turnip mosaic virus genomic RNA for partial NIb replicase and coat protein,
DE   isolate Wenzhou
XX
KW   coat protein; NIb replicase; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RC   Revised by [4]
RA   Adams M.J.;
RT   ;
RL   Submitted (24-AUG-2000) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Chen J., Chen J., Adams M.J.;
RT   "A universal PCR primer to detect members of the Potyviridae and its use to
RT   examine the taxonomic status of several members of the family";
RL   Arch. Virol. 146:757-766(2001).
XX
RN   [4]
RP   1-1709
RA   Adams M.J.;
RT   ;
RL   Submitted (03-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
DR   SPTREMBL; Q9EAA9; Q9EAA9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1709
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12230"
FT                   /virion
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="Wenzhou"
FT                   /specific_host="Turnip"
FT   CDS             <1. .1500
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9EAA9"
FT                   /product="polyprotein"
FT                   /protein_id="CAC05304.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNG
FT                   DDLLLSVHPEYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKL
FT                   EPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQ
FT                   EGKAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDYEDGAEACVYHQAGETLDAGLTD
FT                   EQKQAEKEKKEREKAEKERERQKQLALKKGKDVAQEEGKRDKEVNAGTSGTFSVPRLKS
FT                   LTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKM
FT                   QIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVA
FT                   EAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTPRTPIRAREAHIQMKAAALR
FT                   GANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .633
FT                   /product="NIb replicase"
FT   mat_peptide     634. .1497
FT                   /product="coat protein"
FT   3'UTR           1501. .>1709
XX
SQ   Sequence 1709 BP; 525 A; 350 C; 448 G; 386 T; 0 other;

AJ297629  Length: 1709  December 21, 2001 15:40  Type: N  Check: 2526  ..

       1  gggaacaaca gcggacaacc atcgactgtt gtagacaaca cactcatggt
      51  catactggca gtcaactatt cactcaagaa aagtggaatt ccaagtgagc
     101  tgcgcgacag catcatcaga ttcttcgtca acggagatga tttattgcta
     151  agcgtacacc cagagtatga gtatatcctt gacactatgg cagacaactt
     201  tcgtgaactg ggcctgaagt atactttcga ctcgaggacc agggaaaaag
     251  gagacctttg gtttatgtcg caccaagggc acaaaagaga gggaatctgg
     301  attcccaagc ttgagccaga gcgaatagta tcaattctag aatgggatcg
     351  atcgaaagag ccatgtcatc gactagaggc aatctgcgca gcgatgattg
     401  agtcgtgggg atacgacaag ttgactcacg agatacgcaa gttttacgcg
     451  tggatgattg aacaagctcc atttagctcc ctagcacaag aagggaaagc
     501  tccttacata gcggaaacag cgctgaggaa gctctacctt gataaggaac
     551  cagctcaaga ggatctcacc cattatttgc aagcaatctt tgaggattat
     601  gaagatggtg ctgaggcttg tgtttatcac caggcaggtg aaacgcttga
     651  cgcaggtttg acagacgagc aaaagcaggc ggagaaggag aagaaggaga
     701  gagagaaggc agaaaaggaa cgagagaggc agaagcagtt ggcactcaag
     751  aaaggcaagg atgttgcaca agaggaggga aaacgcgaca aggaagtaaa
     801  cgctggaacc tctggaactt tcagtgtacc caggcttaag agtctgacaa
     851  gcaagatgcg cgtgccaaga tacgagcaaa gagtggctct aaacctcgat
     901  catctaatcc tatacacgcc ggagcagacg gatctatcca acacacgctc
     951  aacgcgaaag cagtttgaca catggtttga aggtgtaatg gctgattacg
    1001  agctgacgga ggacaaaatg caaatcattc tcaatggtct aatggtctgg
    1051  tgcattgaga acggaacctc cccgaacata aacggaatgt gggtgatgat
    1101  ggacggcgat gatcaggtgg aattcccgat caaaccgctc attgaccacg
    1151  ccaaacccac atttaggcag ataatggccc atttcagtga cgtagctgaa
    1201  gcgtacattg aaaagcgtaa ccaagaccga ccatacatgc cacgatatgg
    1251  tcttcagcgc aatttaaccg acatgagctt agctcgatac gcgtttgatt
    1301  tctatgaaat gactcctaga actccaatac gtgcgagaga ggcacacatc
    1351  cagatgaaag cagcagcact gcgtggcgca aataacaatt tgttcggctt
    1401  ggatggaaac gttggcacaa cggtagagaa cacggagagg catacgaccg
    1451  aggacgttaa tcggaacatg cataacttac ttggcgttaa ggggttatga
    1501  agttgtatgc tggtagacta taagtattta agtttactcg ttagtattct
    1551  cgcttatggg aaatatgtaa gtttgttaaa gcagccagtg tgactttgtc
    1601  atgtgtgttg ttgttacttt ctatattttc gccgaacatt ttattggtgt
    1651  tagcgcatgt ggtgaggatc gtcctcgatt gccttaacat ttgataggat
    1701  gcaagggac