Sequence of DPV Soil-borne cereal mosaic virus
Soil-borne wheat mosaic virus ORF1, ORF1 readthrough and ORF3, genomic segment RNA2, (Wiltshire, UK)
ACC No: AJ298069
Dated: 2005-06-27 | Length: 3654 | CRC: 363171383
!!NA_SEQUENCE 1.0
ID SWH298069 standard; genomic RNA; VRL; 3654 BP.
XX
AC AJ298069;
XX
SV AJ298069.1
XX
DT 06-JUN-2001 (Rel. 68, Created)
DT 27-JUN-2005 (Rel. 84, Last updated, Version 3)
XX
DE Soil-borne wheat mosaic virus ORF1, ORF1 readthrough and ORF3, genomic
DE segment RNA2, (Wiltshire, UK)
XX
KW coat protein; ORF1; ORF1 readthrough; ORF3.
XX
OS Soil-borne wheat mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-3654
RA Clover G.R.;
RT ;
RL Submitted (04-DEC-2000) to the EMBL/GenBank/DDBJ databases.
RL Clover G.R., Plant Health, Central Science Laboratory, Sand Hutton. York,
RL N. Yorkshire, YO41 1LZ, UNITED KINGDOM.
XX
RN [2]
RA Ratti R., Budge G., Ward L., Clover G., Rubies-Autonell C., Henry C.;
RT "Detection and relative quantitation of Soil-borne cereal mosaic
RT virus(SBCMV) and Polymyxa graminis in winter wheat using real-time
RT PCR(TaqMan(r))";
RL J. Virol. Methods 122(1):95-103(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3654
FT /country="United Kingdom:Wiltshire"
FT /db_xref="taxon:28375"
FT /mol_type="genomic RNA"
FT /note="RNA2"
FT /virion
FT /organism="Soil-borne wheat mosaic virus"
FT CDS 193. .2577
FT /db_xref="GOA:Q91DN0"
FT /db_xref="InterPro:IPR001337"
FT /db_xref="UniProt/TrEMBL:Q91DN0"
FT /note="ORF1 readthrough"
FT /note="putative translation initiation site at position
FT 313"
FT /transl_except=(pos:841. .843,aa:OTHER)
FT /function="virion assembly and fungus transmission"
FT /protein_id="CAC40959.1"
FT /translation="MDKLTRLKGEVDRSLQKAADKVTAESTESLQSKVVVQLPQMAVKN
FT GYTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILTHLGVMLNGVSKLGERNFFS
FT RQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKGEGSQTRNAKRGTTPTTNQV
FT EGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDSFEAKFNLKWEGTSXRDGVS
FT GKLRARIVEDFQNRLVLADDLGVFPRRNLSGEVIRDEPEIIYAELEDKLLSFESSVYHP
FT KAVTMETEVSVLPKLQTDLETGNAEEDIETTVVTEVLIDEESSYFWLYLVFLLLSILIS
FT CFIALSRWFICFLGNRGGRGGPFFRRIATALWSARLWLLSKAARRYGNLGIVRKRYTRA
FT GVRRYLRDYNFQFDEWESVVDCAPSEALIVADQRMFVRAVNKIVDLKGDFDAIEIVKKT
FT FLNYGVRNYKVERWLNRHTIRSALGVLSDVTKREVLTLTDGMLSLENATLDEVLGCDVE
FT SQRNSMYFKDIVALQFAFRLIGAPEFSDFVMAYKGTLDRCYVEATKRHTSMLEQFHVNE
FT DQKRRNEKALEWLLMLGQGAFVFSAAVTAGVTIFKIHKWIKSRMLLRALQMLPSVGGGG
FT NEGGGRFSEEALNRFAASQTPEERIEALHTDFDTAADDMESFSPEDMQAEIRHVIQAHV
FT DGTYHAADLPFLGDMSDAVVPAMADSVVDLSNVSSDVGSVDTSVSSVTSKVRRRAVASN
FT TRIYPSVGNVRYSDIKSPRVSGKSGISSMKMKITSRPMLAS"
FT CDS 193. .843
FT /db_xref="GOA:Q91DM9"
FT /db_xref="InterPro:IPR001337"
FT /db_xref="UniProt/TrEMBL:Q91DM9"
FT /note="ORF1"
FT /note="putative translation initiation site at position
FT 313"
FT /product="coat protein"
FT /protein_id="CAC40960.1"
FT /translation="MDKLTRLKGEVDRSLQKAADKVTAESTESLQSKVVVQLPQMAVKN
FT GYTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILTHLGVMLNGVSKLGERNFFS
FT RQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKGEGSQTRNAKRGTTPTTNQV
FT EGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDSFEAKFNLKWEGTS"
FT CDS 2647. .3144
FT /db_xref="InterPro:IPR007609"
FT /db_xref="UniProt/TrEMBL:Q779A2"
FT /note="ORF3"
FT /product="hypothetical protein"
FT /protein_id="CAC40961.1"
FT /translation="MSACAFHSCDKCVDGPKNVVCVSKYRHSVYKVLGLSVVKCRLPAD
FT CGVNCGMPAAFVLEDGHPRLTLDGYCGEKHKGYVISGAWRHAQLRTLNDELDKLEKRGE
FT FLKTQIRVLSETANANTAPVYAPTKINRMKAEVQDVNVKIQDRSTALAGVMDAVALNLS
FT PK"
XX
SQ Sequence 3654 BP; 976 A; 632 C; 964 G; 1082 T; 0 other;
AJ298069 Length: 3654 July 5, 2005 08:55 Type: N Check: 6747 ..
1 ttacgttgag tgttaactct tcttgtgata ttacctttct taccaggata
51 agaaataaaa tattttctgg gttatcatta tctcgaaact tagcagagac
101 taacatctcg ctgctctagg cctgcaatgc aataaatcct aggtagtcag
151 ctgttagcgt gtgacgttga aggatagtgt tatttcggtt cgctggataa
201 gcttacgaga cttaaaggtg aggtcgacag gtccttacaa aaggctgcgg
251 ataaggtcac tgctgaaagt actgaatcgt tacaatcgaa agtggttgtg
301 cagttacctc aaatggctgt caagaacggt tatacgggtt acaacaagga
351 attgaatttg atggcatcta ttcatccttt cattaggctg ggtactttga
401 taagtcagat tgagggatgg caagcaacac gagctagcat acttacccat
451 ttaggtgtaa tgctcaacgg tgttagtaag ttaggtgagc gaaatttttt
501 ctctagacag aaaagatttg ggacacacac tcaggacggt gacgagatat
551 tttgtgacct tggaggtgag gcagttatgc aaatcatcac cagactcaca
601 gtatcactac aatccgcgaa gggtgagggt tcccagacca gaaatgctaa
651 gagagggacg acgccgacta ccaaccaagt tgagggtgag gaacaaggtc
701 aaactgatca gacgttagcc atttcgaatg cgctggctga atttatgact
751 ttcatccaca ctaaagattt cacgacgaat gagtgttaca cgcaagactc
801 ttttgaagcc aaatttaatt tgaagtggga aggtacgagt tgacgggacg
851 gcgtctcggg aaagttgagg gcacgcattg tcgaagattt ccagaatagg
901 ctggttttgg ccgacgattt gggtgttttt ccgagacgca atcttagcgg
951 tgaggtgata agggacgagc ctgagataat atatgcagaa ctagaggaca
1001 agctcttgag ctttgagagt tctgtatatc atcctaaagc tgtgactatg
1051 gagacagaag tgtctgtatt gccgaaattg caaacggatc ttgaaacagg
1101 taacgctgaa gaagacattg agacaactgt ggttactgag gtactcatcg
1151 atgaggaaag cagttacttc tggttatacc tcgtatttct cttattgtct
1201 atccttatat cgtgtttcat tgcgctgtcg cgatggttta tatgttttct
1251 cggtaataga ggagggcgcg gtggcccttt ctttcggaga atagccactg
1301 cattgtggag cgcgcgactg tggctgttaa gtaaggcggc cagacgttac
1351 ggcaatcttg gaatcgtacg aaagagatat acacgtgctg gcgtgcgcag
1401 gtacttgcgt gattataatt tccaatttga tgaatgggaa agcgtggttg
1451 actgtgctcc gagtgaagct ctaatcgtcg cagatcagag aatgtttgtg
1501 agggctgtga acaagattgt ggatttaaag ggtgattttg atgctattga
1551 aattgttaag aagactttcc tgaattacgg agtccgcaat tacaaagtgg
1601 aaagatggtt gaacaggcat acaatacgct cggcacttgg tgtactgagc
1651 gatgttacga agagagaagt acttacatta actgatggta tgctatcatt
1701 ggagaacgct acgcttgatg aggtactggg gtgtgatgtt gagagtcaac
1751 gaaatagcat gtactttaag gacattgttg ccttgcagtt tgcttttcgt
1801 cttattggtg caccagaatt ctccgacttt gtgatggctt acaaaggtac
1851 tttggatcgc tgttatgtgg aagcgactaa gagacatact tcgatgttgg
1901 agcagtttca tgttaacgaa gatcagaaga gaagaaacga gaaggcgtta
1951 gagtggttgc ttatgctggg gcaaggagct ttcgtttttt ctgctgctgt
2001 aacagctggt gttacgatct tcaagattca taaatggata aaaagtcgta
2051 tgctcttaag ggctctgcaa atgctaccgt ctgttggtgg tggtggtaac
2101 gaaggtggtg gtagattttc tgaggaggct cttaacagat ttgcagcaag
2151 tcaaactcct gaggaacgca ttgaggctct gcatactgat ttcgacacgg
2201 ctgctgatga catggaaagt ttttcaccag aagacatgca ggctgagatt
2251 agacatgtta ttcaagctca cgttgatgga acttatcacg cagcagatct
2301 tccttttctg ggcgacatgt ctgatgctgt tgttcctgct atggcagatt
2351 ctgttgtcga tttgagtaat gttagtagtg atgtgggaag tgtggatacg
2401 tctgtttcaa gtgtgactag taaggttaga cgtcgtgccg ttgctagcaa
2451 cacgaggatt tacccgagtg ttggtaatgt taggtatagt gatattaagt
2501 caccgagggt tagtggtaaa agtggaatta gtagtatgaa aatgaaaatc
2551 actagtaggc ctatgttggc gtcctagtgt gttgttttta aaattacttg
2601 ttcacaccgc taccgctggt ctttctcggt ctttcttcct aacattatgt
2651 cggcttgcgc ttttcactct tgcgataagt gtgttgatgg acccaagaac
2701 gttgtatgtg ttagtaaata ccgtcatagt gtttataagg ttttgggcct
2751 ttctgttgtt aagtgtcgtc ttcctgcaga ttgtggtgtt aattgtggta
2801 tgcctgcagc ttttgttctc gaagatgggc atcctagact aactcttgat
2851 ggttactgtg gtgagaaaca caaaggttac gttatttctg gtgcttggcg
2901 acatgcgcaa cttcgtactt taaatgatga acttgataag ttggagaaga
2951 ggggggagtt tttgaaaact cagataagag tgctcagtga aactgctaac
3001 gctaacactg ctcctgtata tgctcccacg aaaattaatc gtatgaaggc
3051 ggaggttcag gatgttaatg taaaaatcca ggaccgtagt actgctcttg
3101 caggtgtcat ggatgctgtc gcgttgaatt tatcaccgaa atagttcgcc
3151 acggaagtgt ggagccatat gatgagtacg ttaacgttgt atttgtataa
3201 tggatatatg tgtgtaccgg aataggtaac caggataaag aaccctagcg
3251 aaaatgtcct acaaaaacat tatgcattgt ggttttgttg tgtggtttat
3301 ttttgcttat attgctatgt tgcatgtgtg tgttaaaaat agtctaacat
3351 gtcgggcaga gacacgtcgt tgccgtcacg atagacggag ccgctgggat
3401 tgcggattat aaatcgaaca agcctatttg tacgggttga gtacaaacgt
3451 ggccatcacg atagatggtt ctgtttttcg aacagatgta aatcggaggc
3501 gtcgtgcagt acggtaaact gcacatctat cctctagttt ctattgatgt
3551 aattgaaaaa agatcaatat tttacgatga tgaggagcga ctggtggtcg
3601 cggtagctat gacacagcta ctaagagggg ttcaaatccc cccccgaacc
3651 ggag