Sequence of DPV Canary circovirus

canary circovirus, complete genome

ACC No: AJ301633

Dated: 2002-03-09 | Length: 1952 | CRC: -541232852

                !!NA_SEQUENCE 1.0
ID   CC383982   standard; circular DNA; VRL; 1952 BP.
XX
AC   AJ301633; AF346618;
XX
SV   AJ301633.2
XX
DT   26-JUL-2001 (Rel. 68, Created)
DT   09-MAR-2002 (Rel. 71, Last updated, Version 4)
XX
DE   canary circovirus, complete genome
XX
KW   cap gene; capsid protein; rep gene; replicase.
XX
OS   canary circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN   [1]
RC   revised by [4]
RA   Weston J.H.;
RT   ;
RL   Submitted (14-NOV-2000) to the EMBL/GenBank/DDBJ databases.
RL   Weston J.H., Veterinary Sciences Division, The Queen's University of
RL   Belfast, Stoney Road, Belfast, BT4 3SD, UNITED KINGDOM.
XX
RN   [2]
RA   Todd D., Weston J., Ball N.W., Borghmans B.J., Smyth J.A., Gelmini L.,
RA   Lavazza A.;
RT   "Nucleotide sequence-based identification of a novel circovirus of
RT   canaries";
RL   Avian Pathol. 30:321-325(2001).
XX
RN   [3]
RP   1-1952
RA   Phenix K.V., Weston J.H., Ypelaar I.B., Raidal S.R., Lavazza A., Todd D.;
RT   ;
RL   Unpublished.
XX
RN   [4]
RP   1-1952
RA   Phenix K.V.;
RT   ;
RL   Submitted (06-FEB-2001) to the EMBL/GenBank/DDBJ databases.
RL   Veterinary and Biomedical Sciences, Murdoch University, South Street,
RL   Perth, WA 6150, Australia.
XX
DR   SPTREMBL; Q912W1; Q912W1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1952
FT                   /db_xref="taxon:142661"
FT                   /organism="canary circovirus"
FT                   /specific_host="serinus canaria"
FT   CDS             32. .904
FT                   /db_xref="SPTREMBL:Q912W1"
FT                   /note="ORFC1"
FT                   /gene="rep"
FT                   /product="replicase"
FT                   /protein_id="CAC44748.2"
FT                   /translation="MAPVRAAAAKRWCFTLNNYTAEEEAKVRALLPGEFHFAICGKERG
FT                   EQGTPHLQGFLHFKKKQRLSALKKLLARAHWEKARGSDHDNEEYCSKENDVILTIGEPV
FT                   QGNRSDLAGAVAAVKAGRRMVDIAREFSEIYVKYGRGLRDLALMIGQKPRDFKTEVVVI
FT                   TGPSGVGKSRLASEMEGSKFYKMKGDWWDGYSNEDIVIMDDFYGWLPFCEMLRLMDRYP
FT                   HKVPVKGSYVEFTSKKIVITSNTHPESWYCPDKCYLPALFRRINKWMYWDGLRFEDVPD
FT                   AMKKHPINY"
FT   mRNA            complement(275. .679)
FT                   /note="ORF C2"
FT                   /gene="rep"
FT                   /product="hyopothetical protein"
FT   polyA_signal    943. .948
FT                   /note="putative"
FT                   /gene="rep"
FT   polyA_signal    complement(1153. .1158)
FT                   /note="putative"
FT                   /gene="rep"
FT   CDS             complement(1154. .1906)
FT                   /gene="cap"
FT                   /product="capsid"
FT                   /protein_id="CAD23544.1"
FT                   /translation="MWLTFNQVARRRRPLAPRRRRWRRRYWXRRRRIPANRRGHRTNRV
FT                   YRFRFVREFGQVLQKGTGGSQLSFGTDGINIILDDFLDWGTINWRLPFEDYRIRLAKVE
FT                   MRPLNESWEEWKGFGHNVPIQDNHLEDFFKKTRLDADPLANWDGARKWDLRKGFKRLFK
FT                   PRPQLSVTDTDAANVTAALWLNNPKSLWIPIMKKSDQNLPSSGTRVKHYGLAFSWPEPT
FT                   PNQMDYQVKVTIYCEFRQMNLTHLATPK"
FT   stem_loop       join(1935. .1952,1. .10)
FT                   /note="putative"
FT   rep_origin      join(1946. .1952,1. .2)
FT                   /note="nonanucleotide motif,CAGTATTAC"
XX
SQ   Sequence 1952 BP; 473 A; 464 C; 537 G; 475 T; 3 other;

AJ301633  Length: 1952  September 18, 2002 10:52  Type: N  Check: 2788  ..

       1  accggccact tggagccacg gagccaccac aatggcacct gttagagctg
      51  ctgctgcaaa gagatggtgc tttacgttga ataactatac ggcagaagaa
     101  gaagctaaag tgagggccct gctccctggt gagttccact ttgcaatatg
     151  tgggaaggaa cggggggagc agggaactcc tcatttgcag ggctttctac
     201  attttaaaaa gaagcagcga cttagtgccc tgaagaaact acttgcccga
     251  gctcactggg aaaaggcccg tggctcagat catgataacg aggagtattg
     301  tagtaaggaa aacgacgtga tactcaccat tggggagcca gttcaaggca
     351  accggagtga ccttgccgga gctgttgccg ccgtgaaggc cggaaggaga
     401  atggtggata tcgcgcgaga gttcagcgag atctacgtca agtatgggcg
     451  tggtctgagg gatttggccc tgatgattgg acagaaaccc cgtgacttca
     501  agacggaagt cgtcgttatc acggggcctt ccggggtggg caagtcgaga
     551  cttgcctctg aaatggaagg atcgaagttc tacaagatga aaggtgactg
     601  gtgggatggg tattccaatg aggatatagt catcatggat gacttctatg
     651  ggtggctgcc cttctgtgaa atgttgagat taatggacag gtatccacat
     701  aaagttcccg tgaaggggtc ttatgtggag ttcacgtcta agaagattgt
     751  cataacgagc aacacgcacc cggaaagttg gtactgtccc gataagtgct
     801  atctgcctgc tttgttcagg agaatcaata agtggatgta ctgggatgga
     851  ctgagatttg aggatgtgcc ggatgcaatg aagaagcacc cgatcaacta
     901  ttaacactca gccccgagga aaagagcgtc tcggaggtga ttaataaaaa
     951  atgcgcgcgc agcgcgcggc gaaggccgaa ggccgaagcc gcctgagacc
    1001  gcgcgaagcg cggccaggcg cgagcgacag cgagcgggca gaccccgggt
    1051  ccccccgggg tcgcccccgt cgaggggccg aaggccccga agaaagctat
    1101  tttgtacccc ccatcaaata aaaagacttc agacaaataa atgtttggtg
    1151  tctttatttt ggagttgcca agtgagttaa gttcatttgc cggaattcac
    1201  agtagatggt gaccttgacc tggtagtcca tctggttggg ggtgggttct
    1251  ggccaactga aggctaaccc gtagtgtttg accctggttc cggagctggg
    1301  aaggttctgg tcacttttct tcatgatcgg tatccagagg gatttgggat
    1351  tgttgagcca cagggccgcc gtgacgttag cagcatcagt gtcggtcacg
    1401  cttagttgtg gtcttggttt aaatagcctt ttgaagcctt ttctgagatc
    1451  ccatttacgg gccccgtccc agttcgctag ggggtcagca tcaagtcttg
    1501  tctttttgaa gaagtcctct aggtgattgt cttggatagg tacattgtgc
    1551  ccgaaccctt tccactcctc ccagctttca ttgaggggtc tcatttccac
    1601  ttttgctaac ctgattctat aatcttcaaa aggtaacctc caattgatag
    1651  taccccaatc cagaaagtca tccagtataa tgttgattcc atcagttcca
    1701  aatgacagct gagacccccc tgtccctttt tgtagtacct gaccgaactc
    1751  cctaacaaat ctgaatctat agaccctgtt ggttctgtgg cccctcctgt
    1801  tggcagggat ccttctcctc ctccyccagt aacgacgcct ccatctcctc
    1851  ctcctgggag ccaaaggtcg tcgtctccta gcaacctggt taaaggttaa
    1901  ccacatccgg gttaataatt aaccagtggc yccaagtggc cgtgrcagta
    1951  tt