Sequence of DPV Canary circovirus
canary circovirus, complete genome
ACC No: AJ301633
Dated: 2002-03-09 | Length: 1952 | CRC: -541232852
!!NA_SEQUENCE 1.0 ID CC383982 standard; circular DNA; VRL; 1952 BP. XX AC AJ301633; AF346618; XX SV AJ301633.2 XX DT 26-JUL-2001 (Rel. 68, Created) DT 09-MAR-2002 (Rel. 71, Last updated, Version 4) XX DE canary circovirus, complete genome XX KW cap gene; capsid protein; rep gene; replicase. XX OS canary circovirus OC Viruses; ssDNA viruses; Circoviridae; Circovirus. XX RN [1] RC revised by [4] RA Weston J.H.; RT ; RL Submitted (14-NOV-2000) to the EMBL/GenBank/DDBJ databases. RL Weston J.H., Veterinary Sciences Division, The Queen's University of RL Belfast, Stoney Road, Belfast, BT4 3SD, UNITED KINGDOM. XX RN [2] RA Todd D., Weston J., Ball N.W., Borghmans B.J., Smyth J.A., Gelmini L., RA Lavazza A.; RT "Nucleotide sequence-based identification of a novel circovirus of RT canaries"; RL Avian Pathol. 30:321-325(2001). XX RN [3] RP 1-1952 RA Phenix K.V., Weston J.H., Ypelaar I.B., Raidal S.R., Lavazza A., Todd D.; RT ; RL Unpublished. XX RN [4] RP 1-1952 RA Phenix K.V.; RT ; RL Submitted (06-FEB-2001) to the EMBL/GenBank/DDBJ databases. RL Veterinary and Biomedical Sciences, Murdoch University, South Street, RL Perth, WA 6150, Australia. XX DR SPTREMBL; Q912W1; Q912W1. XX FH Key Location/Qualifiers FH FT source 1. .1952 FT /db_xref="taxon:142661" FT /organism="canary circovirus" FT /specific_host="serinus canaria" FT CDS 32. .904 FT /db_xref="SPTREMBL:Q912W1" FT /note="ORFC1" FT /gene="rep" FT /product="replicase" FT /protein_id="CAC44748.2" FT /translation="MAPVRAAAAKRWCFTLNNYTAEEEAKVRALLPGEFHFAICGKERG FT EQGTPHLQGFLHFKKKQRLSALKKLLARAHWEKARGSDHDNEEYCSKENDVILTIGEPV FT QGNRSDLAGAVAAVKAGRRMVDIAREFSEIYVKYGRGLRDLALMIGQKPRDFKTEVVVI FT TGPSGVGKSRLASEMEGSKFYKMKGDWWDGYSNEDIVIMDDFYGWLPFCEMLRLMDRYP FT HKVPVKGSYVEFTSKKIVITSNTHPESWYCPDKCYLPALFRRINKWMYWDGLRFEDVPD FT AMKKHPINY" FT mRNA complement(275. .679) FT /note="ORF C2" FT /gene="rep" FT /product="hyopothetical protein" FT polyA_signal 943. .948 FT /note="putative" FT /gene="rep" FT polyA_signal complement(1153. .1158) FT /note="putative" FT /gene="rep" FT CDS complement(1154. .1906) FT /gene="cap" FT /product="capsid" FT /protein_id="CAD23544.1" FT /translation="MWLTFNQVARRRRPLAPRRRRWRRRYWXRRRRIPANRRGHRTNRV FT YRFRFVREFGQVLQKGTGGSQLSFGTDGINIILDDFLDWGTINWRLPFEDYRIRLAKVE FT MRPLNESWEEWKGFGHNVPIQDNHLEDFFKKTRLDADPLANWDGARKWDLRKGFKRLFK FT PRPQLSVTDTDAANVTAALWLNNPKSLWIPIMKKSDQNLPSSGTRVKHYGLAFSWPEPT FT PNQMDYQVKVTIYCEFRQMNLTHLATPK" FT stem_loop join(1935. .1952,1. .10) FT /note="putative" FT rep_origin join(1946. .1952,1. .2) FT /note="nonanucleotide motif,CAGTATTAC" XX SQ Sequence 1952 BP; 473 A; 464 C; 537 G; 475 T; 3 other; AJ301633 Length: 1952 September 18, 2002 10:52 Type: N Check: 2788 .. 1 accggccact tggagccacg gagccaccac aatggcacct gttagagctg 51 ctgctgcaaa gagatggtgc tttacgttga ataactatac ggcagaagaa 101 gaagctaaag tgagggccct gctccctggt gagttccact ttgcaatatg 151 tgggaaggaa cggggggagc agggaactcc tcatttgcag ggctttctac 201 attttaaaaa gaagcagcga cttagtgccc tgaagaaact acttgcccga 251 gctcactggg aaaaggcccg tggctcagat catgataacg aggagtattg 301 tagtaaggaa aacgacgtga tactcaccat tggggagcca gttcaaggca 351 accggagtga ccttgccgga gctgttgccg ccgtgaaggc cggaaggaga 401 atggtggata tcgcgcgaga gttcagcgag atctacgtca agtatgggcg 451 tggtctgagg gatttggccc tgatgattgg acagaaaccc cgtgacttca 501 agacggaagt cgtcgttatc acggggcctt ccggggtggg caagtcgaga 551 cttgcctctg aaatggaagg atcgaagttc tacaagatga aaggtgactg 601 gtgggatggg tattccaatg aggatatagt catcatggat gacttctatg 651 ggtggctgcc cttctgtgaa atgttgagat taatggacag gtatccacat 701 aaagttcccg tgaaggggtc ttatgtggag ttcacgtcta agaagattgt 751 cataacgagc aacacgcacc cggaaagttg gtactgtccc gataagtgct 801 atctgcctgc tttgttcagg agaatcaata agtggatgta ctgggatgga 851 ctgagatttg aggatgtgcc ggatgcaatg aagaagcacc cgatcaacta 901 ttaacactca gccccgagga aaagagcgtc tcggaggtga ttaataaaaa 951 atgcgcgcgc agcgcgcggc gaaggccgaa ggccgaagcc gcctgagacc 1001 gcgcgaagcg cggccaggcg cgagcgacag cgagcgggca gaccccgggt 1051 ccccccgggg tcgcccccgt cgaggggccg aaggccccga agaaagctat 1101 tttgtacccc ccatcaaata aaaagacttc agacaaataa atgtttggtg 1151 tctttatttt ggagttgcca agtgagttaa gttcatttgc cggaattcac 1201 agtagatggt gaccttgacc tggtagtcca tctggttggg ggtgggttct 1251 ggccaactga aggctaaccc gtagtgtttg accctggttc cggagctggg 1301 aaggttctgg tcacttttct tcatgatcgg tatccagagg gatttgggat 1351 tgttgagcca cagggccgcc gtgacgttag cagcatcagt gtcggtcacg 1401 cttagttgtg gtcttggttt aaatagcctt ttgaagcctt ttctgagatc 1451 ccatttacgg gccccgtccc agttcgctag ggggtcagca tcaagtcttg 1501 tctttttgaa gaagtcctct aggtgattgt cttggatagg tacattgtgc 1551 ccgaaccctt tccactcctc ccagctttca ttgaggggtc tcatttccac 1601 ttttgctaac ctgattctat aatcttcaaa aggtaacctc caattgatag 1651 taccccaatc cagaaagtca tccagtataa tgttgattcc atcagttcca 1701 aatgacagct gagacccccc tgtccctttt tgtagtacct gaccgaactc 1751 cctaacaaat ctgaatctat agaccctgtt ggttctgtgg cccctcctgt 1801 tggcagggat ccttctcctc ctccyccagt aacgacgcct ccatctcctc 1851 ctcctgggag ccaaaggtcg tcgtctccta gcaacctggt taaaggttaa 1901 ccacatccgg gttaataatt aaccagtggc yccaagtggc cgtgrcagta 1951 tt