Sequence of DPV Goose circovirus

Goose circovirus complete genome

ACC No: AJ304456

Dated: 2001-08-07 | Length: 1821 | CRC: -636190287

                !!NA_SEQUENCE 1.0
ID   GCI304456  standard; circular DNA; VRL; 1821 BP.
XX
AC   AJ304456;
XX
SV   AJ304456.1
XX
DT   07-AUG-2001 (Rel. 68, Created)
DT   07-AUG-2001 (Rel. 68, Last updated, Version 1)
XX
DE   Goose circovirus complete genome
XX
KW   ORFc1; ORFc2; ORFV2; rep gene; replication associated protein.
XX
OS   goose circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1821
RA   Weston J.H.;
RT   ;
RL   Submitted (13-DEC-2000) to the EMBL/GenBank/DDBJ databases.
RL   Weston J.H., Veterinary Sciences, The Queen's University of Belfast, Stoney
RL   Road, Belfast, Northern Ireland, UK, BT4 3SD, UNITED KINGDOM.
XX
RN   [2]
RA   Todd D., Weston J.H., Soike D., Smyth J.A.;
RT   "Genome sequence determinations and analyses of novel circoviruses from
RT   goose and pigeon";
RL   Virology 286:354-362(2001).
XX
DR   SPTREMBL; Q91EK1; Q91EK1.
DR   SPTREMBL; Q91EK2; Q91EK2.
DR   SPTREMBL; Q91EK3; Q91EK3.
DR   SPTREMBL; Q91EK4; Q91EK4.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1821
FT                   /country="Germany"
FT                   /db_xref="taxon:146032"
FT                   /virion
FT                   /organism="goose circovirus"
FT                   /specific_host="Anser sp."
FT   CDS             join(1613. .1821,1. .154)
FT                   /db_xref="SPTREMBL:Q91EK4"
FT                   /note="ORFV2"
FT                   /product="hypothetical protein"
FT                   /protein_id="CAC50260.1"
FT                   /translation="MFCVCLTLKIVYFDLIRPMCSLRRLYRRLRLVARLRREYRLRGLA
FT                   RYSGMMGSGFLWAGTKPLQAPYILLPAPVLRTPHPTRKLQTPLNEPPRTWRKTATTHTR
FT                   GGSSLLITLPLKITVP"
FT   CDS             73. .954
FT                   /db_xref="SPTREMBL:Q91EK3"
FT                   /gene="rep"
FT                   /product="putative replication associated protein"
FT                   /protein_id="CAC50261.1"
FT                   /translation="MAKNGNYSYKRWVFTINNPTFEDYCAVVEFCNLDNCKFAIVGEEK
FT                   GEKEGTPHLQGFLSLRKNAKAAALEENLGGRAWLSRARGSDEDNEEYCSKESTYLRVGE
FT                   PNRKGRSSDLPDAASDVLAGLPITDVARKYPTTYVMFGRGLERLRQLIVETARDWKTEV
FT                   IVLIGRPGSGKSRYAFEFPAREKYYKSRGKWWDGYNGQDVVVMDDFYGWLPYDDLLRIC
FT                   DRYPLRVEYKGGMTQFVAKTLIITSNREPRDWYKCEFDVSALYRRINQYLILTPDGYAP
FT                   APEFMLPFKINY"
FT   CDS             complement(128. .427)
FT                   /db_xref="SPTREMBL:Q91EK2"
FT                   /note="ORFC2"
FT                   /product="hypothetical protein"
FT                   /function="unknown"
FT                   /protein_id="CAC50262.1"
FT                   /translation="MPRRGDHLSDLFGLVHRLEGMSTLWNNILHYLRQIPELETARLFL
FT                   PGSLQAQQLSHSFADSGIPAGEVCLLSLLSLRRLSRTCSYPDCRTQLRHSNLQR"
FT   CDS             complement(1009. .1761)
FT                   /db_xref="SPTREMBL:Q91EK1"
FT                   /note="ORFC1"
FT                   /product="capsid"
FT                   /protein_id="CAC50263.1"
FT                   /translation="MPLYRARPRSLYSRRRRATNRRRRYRRRRLHIGRIRSKYTIFNVK
FT                   QTQNISFTFFGTGSPDKNKWQAMSLEAVQSSGTSPKPGINLRFAVFGDRLPGTGNQYHY
FT                   PFDYYMIRMVKVELRPAFNPFQRVRTQGSTYIDKEGNITTTTSGGEWNVDPYAAMSSRK
FT                   TWSPHRYHKRVFVPKPTIQQGGTGTNIWSTWYTPGGRQLWLNSIQDNVVFYGMGMSLRQ
FT                   AEDTAAPLTVEATITYYIRFGQWTGLSP"
XX
SQ   Sequence 1821 BP; 405 A; 393 C; 503 G; 520 T; 0 other;

AJ304456  Length: 1821  September 18, 2002 10:52  Type: N  Check: 7977  ..

       1  accggcgcct gtactccgta ctccgcaccc tacgaggaag ctgcagacac
      51  cgcttaacga gccaccccga acatggcgaa aaacggcaac tactcataca
     101  agaggtgggt cttcactatt aataacccta cctttgaaga ttactgtgcc
     151  gtagttgagt tctgcaatct ggataactgc aagttcgcga tagtcggcga
     201  agagaaagga gagaaagaag gcacacctca cctgcaggga ttcctgagtc
     251  tgcgaaagaa tgcgaaagct gctgcgcttg aagagaacct gggaggaaga
     301  gcctggctgt ctcgagctcg gggatctgac gaagataatg aagaatattg
     351  ttccaaagag tcgacatacc ttcgagtcgg tgaaccaaac cgaaaaggtc
     401  gctcaagtga tctccccgac gcggcatccg atgtgctcgc tggtctgccg
     451  ataactgacg tggcccggaa gtacccgacg acttatgtaa tgtttgggcg
     501  gggcttagag cggttgcgtc agctgatcgt ggagaccgct cgtgattgga
     551  agacggaggt catcgttctg attgggcggc ctggaagcgg gaagagccgt
     601  tacgcgtttg aatttcccgc gcgtgaaaag tattataaat ctcgcgggaa
     651  gtggtgggat ggctataatg ggcaggatgt ggttgtcatg gatgattttt
     701  atgggtggct gccttacgat gaccttttaa ggatctgtga tcgctatcct
     751  ttaagggtag agtacaaggg aggtatgacc cagttcgttg ctaagacact
     801  tataattacc tctaataggg agccgcgtga ttggtataaa tgcgagtttg
     851  atgtgtctgc attgtatcgg agaattaatc agtacctgat attaaccccc
     901  gacggatatg cacccgcccc cgagtttatg ctgccgttta aaataaacta
     951  ctaaagtcct ggttaaggtt agaaacagga acgtttattg tgtaaaatta
    1001  caataaagtt atggtgaaag cccagtccat tgtccgaatc ttatgtaata
    1051  ggtaatggtt gcttctactg tcagaggtgc tgcggtgtct tctgcttgtc
    1101  ttagtgacat gcccattccg tagaatacta cgttgtcttg aattgagttc
    1151  agccatagtt gtcttcctcc tggggtgtac caggtgctcc atatatttgt
    1201  tcctgttcct ccctgttgga tggttggttt cgggacaaat actcttttgt
    1251  ggtatctgtg aggtgaccac gttttcctgg agctcattgc tgcgtagggg
    1301  tctacgttcc actctccacc gctggttgtg gttgtaatgt tgccttcttt
    1351  gtctatgtat gtgctgcctt gtgtgcgtac tctttggaag gggttaaatg
    1401  cgggacggag ttccaccttt accatgcgta tcatgtagta gtcgaacggg
    1451  taatggtatt ggtttcctgt tcctggcaat ctgtctccga agactgcgaa
    1501  ccgtaggtta attccgggtt tggggctggt gccagatgat tgtactgctt
    1551  ccaggctcat tgcttgccat ttgtttttgt ctgggcttcc ggttccgaag
    1601  aacgtgaatg atatgttctg cgtttgtttg acattgaaga ttgtgtactt
    1651  tgaccttatt cgtccgatgt gtagccttcg tcgtctgtat cgtcgtctgc
    1701  ggttggttgc ccgcctacga cgagaatata gactccgcgg tctcgcgcga
    1751  tacagcggca tgatgggcag tggcttcctg tgggcgggga caaaaccgtt
    1801  acaggcgccg tatatattat t