Sequence of DPV Carnation mottle virus
Carnation mottle virus p27 gene, p7 gene, p9 gene and CP gene, genomic RNA
ACC No: AJ304989
Dated: 2005-04-15 | Length: 4002 | CRC: 1460549308
!!NA_SEQUENCE 1.0
ID CMO304989 standard; genomic RNA; VRL; 4002 BP.
XX
AC AJ304989;
XX
SV AJ304989.1
XX
DT 16-JAN-2001 (Rel. 66, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Carnation mottle virus p27 gene, p7 gene, p9 gene and CP gene, genomic RNA
XX
KW coat protein; cp gene; movement protein; p27 gene; p7 gene; P9 gene;
KW RNA polymerase.
XX
OS Carnation mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4002
RA Pallas V.;
RT ;
RL Submitted (11-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL Pallas V., Biologia del estres, Instituto de Biologia Molecular y Celular
RL de Plantas-CSIC, Avenida de los Naranjos s/n, 46022 Valencia, SPAIN.
XX
RN [2]
RX DOI; 10.1074/jbc.M100706200.
RX MEDLINE; 21264602.
RX PUBMED; 11279121.
RA Vilar M., Esteve V., Pallas V., Marco J.F., Perez-Paya E.;
RT "Structural properties of carnation mottle virus p7 movement protein and
RT its RNA-binding domain.";
RL J. Biol. Chem. 276(21):18122-18129(2001).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4002
FT /db_xref="taxon:11986"
FT /mol_type="genomic RNA"
FT /organism="Carnation mottle virus"
FT /isolate="Dixie"
FT CDS 69. .806
FT /db_xref="UniProt/TrEMBL:Q9DJV5"
FT /gene="p27"
FT /product="RNA polymerase"
FT /protein_id="CAC22322.1"
FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR
FT GARRIVSSGGRCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE
FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA
FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYGRKIAMASILNRKGWCWRLMVNPLDR
FT ARWWEMWCVVNGFDSNKPVTFPK"
FT CDS 2333. .2518
FT /db_xref="GOA:Q9DJV4"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProt/TrEMBL:Q9DJV4"
FT /note="The central region contains an RNA-binding motif"
FT /gene="p7"
FT /product="movement protein"
FT /protein_id="CAC22323.1"
FT /translation="MDIESEVPVVEKQMLAGNRGKQKTRRSVAKDAIRKPASDSTNGGN
FT WVNVADKIEVHIHFNF"
FT CDS 2424. .2678
FT /db_xref="UniProt/TrEMBL:Q9DJV3"
FT /gene="p9"
FT /product="movement protein"
FT /protein_id="CAC22324.1"
FT /translation="MPSVNLHLIVLTGVIGLMLLIRLRCTFTSTFSLPPLVTLNQIIAL
FT SFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK"
FT CDS 2668. .3714
FT /db_xref="GOA:Q9DJV2"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q9DJV2"
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="CAC22325.1"
FT /translation="MENKGERIAMNPTVQTLAQKGDKLAVKLVTRGWASLSTNQKRRAE
FT MLAGYTPAILAFTPRRPRMTNPPPRTSRNSPGQAGKSMTMSKTELLSTVKGTTGVIPSF
FT EDWVVSPRNVAVFPQLSLLAMNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTP
FT PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSTSDDAKLVDFGRIVLSTYGFD
FT KADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK
FT WCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAICELVTQMEGQILKINKTSAEQP
FT LQWVVYRM"
XX
SQ Sequence 4002 BP; 1134 A; 865 C; 1087 G; 916 T; 0 other;
AJ304989 Length: 4002 April 19, 2005 08:52 Type: N Check: 9331 ..
1 gggtaagctg gcgggcaaac ctatctctat cttcattaca ttatatattc
51 taaccatctg ctttcactat gggattaccc agtctactag tggaaggcgt
101 tattggatgc actctagtcg gtggtttggt ggctgtgggt agcgcagcgc
151 tggccgttcg ggcgaccatc ggtgttgtag aattcaatag ggagtgtgtg
201 cgcggggcga gaaggatcgt atctagcgga ggaaggtgct tgatagtcca
251 atccccttat ggtaatccta accaaggatt gataagaggc gaggacgaag
301 aaattgacaa tgtggaggag tcaacaccgg aggaattgac tcagttgatt
351 gaggtcaagg cggaagtgga tgggaaagag gtggtcgtct ccaagaagcg
401 tgtagtaaac aggcacttga gacaacgatt cgttcgctcc atagccatcg
451 aagccaaaaa tcactttggt ggcgacatca gccctagcaa ggccaactat
501 ctttccgttt ccaagttttt aacggggaaa tgcaaggaaa gacatgttgt
551 gcccgctcac actagagatt gtgtgagtgc agctatggtg ctggtattca
601 cccccgacgt ccacgagatc aggatgatgg caggattggc gtctgacgca
651 gcgtacggaa gaaagatcgc aatggcaagc atactgaaca ggaaaggatg
701 gtgttggagg ctaatggtaa atccattaga tagggcaaga tggtgggaaa
751 tgtggtgcgt tgtaaacggg tttgactcca acaaacccgt cacctttccc
801 aaataggggg gcctgttcta cctcaatggt gtggagacga aaattcgtcg
851 tggaggccac ccatcagtga ttgaggtaga cgggcaatgt cctcccaaag
901 agagaaaact ctacgtacag aatgccataa ccactggtta tgaatacagg
951 gtccacaacc attcgtacgc aaacctcaga agagggctcc ttgagagagt
1001 tttctatgtt gagcgcaaca aggagctagt cagctgtccg caacctgaac
1051 ccggcagctt taaagagatg ggatacctgc gacgcaggtt ccatagagtg
1101 tgtggcaatc attcccggat ctctgccaat gatttggtag attgttatca
1151 gggcaggaaa cgcacaatct atgagaatgc agcagcgtcc ctactcgata
1201 gagctatcga aaggaaggat ggcgatctta aaacctttat caaggcggag
1251 aaattcaacg tgaatctgaa aagtgatcct gctcctcggg ttatacagcc
1301 taggagccct cgctacaatg tggagttggg ccggtactta aagaagtatg
1351 aacaccatgc ttacaaagcc ttagacaaga tctggggagg accaacagtc
1401 atgaaaggat acactacaga ggaggtagca cagcacattt ggagcgcatg
1451 gaatcaattc cagacacctg tagccatagg atttgacatg tcaagattcg
1501 atcagcacgt gtctgtagcc gcgctcgagt tcgaacattc atgctatttg
1551 gcctgttttg aaggggacgc tcatctcgcc aacttgctta agatgcaact
1601 ggtgaatcat ggcgtgggtt ttgcgagcaa tggaacgttg cgatacacaa
1651 aggaagggtg tagaatgagc ggcgacatga acactgcctt gggcaactgt
1701 ttgttagcct gtcttatcac caaacactta atgaaaatca ggagcagact
1751 gatcaacaat ggggatgact gcgtgcttat ttgcgaaaga acagacatcg
1801 actacgtcgt gagtaattta acgacgggat ggagtcgatt tggtttcaat
1851 tgcatagcag aagagccagt gtacgaaatg gaaaagatca ggttctgcca
1901 gatggcaccg gtgtttgatg gagcaggctg gctgatggtc agggacccct
1951 tggtgagcat gagcaaggat tctcactcct tagtgcattg gaacaacgaa
2001 acgaacgcaa gacaatggct gaagtcagta ggaatgtgcg gtctgcggat
2051 tgccgggggg gttccagttg tgcaagagtt ctaccagaaa tacgttgaaa
2101 cagccggaaa tgtgaaagag aacaaaaata tcacagagaa gagcagttct
2151 gggttcttta tgatggcgga tcgcgctaag cggggctatt ctgctgtgtc
2201 tgaggagtgt cgatttagct tctaccaggc attcggcatc acgccagacc
2251 agcagatcgc gttggagggg gagatcaggt ctctcactat taacaccaac
2301 gtggggcccc agtgtgaagc ggcagattca ctatggatat tgaatcggaa
2351 gtaccagtag ttgaaaagca aatgctcgct gggaacagag gaaaacaaaa
2401 gacacgtaga tcggtggcca aggatgccat ccgtaaacct gcatctgata
2451 gtactaacgg gggtaattgg gttaatgttg ctgataagat tgaggtgcac
2501 attcacttca acttttagtt tgcccccact ggtaacttta aatcagataa
2551 tagcgttgtc attttgtggt cttctgttaa acagcatctc tcgggcagaa
2601 agagcgtgct attacaacta ctctgttgat agttctaaac aacaacacat
2651 ttcgataagt acaccaaatg gaaaataaag gagaaaggat cgcgatgaat
2701 cccactgtgc aaacattggc gcagaagggg gacaagttag ccgtgaagtt
2751 ggtgacaaga ggatgggcct ctctgagtac gaaccagaag aggagagctg
2801 aaatgcttgc tggatacact ccagcgatcc tagccttcac cccccgacga
2851 ccacggatga cgaaccctcc tccaagaacc agtaggaatt caccaggaca
2901 agctggaaag tccatgacga tgagtaagac cgaactatta agcaccgtca
2951 aaggtaccac gggtgttatc ccaagctttg aagactgggt cgtttccccc
3001 cgaaacgtag ccgtcttccc tcaactctcg ctgctagcga tgaacttcaa
3051 caagtaccgc attactgcgc tcactgtgaa gtactcaccc gcgtgcagct
3101 tcgagaccaa tgggagggtg gctctgggat tcaacgatga cgcttcggac
3151 acaccaccaa ccaccaaggt tggattttac gatctgggca aacatgtgga
3201 aactgctgca cagacagcta aggatctagt gataccagta gacggcaaaa
3251 cccggttcat cagggactcg actagtgatg atgccaaact agtcgatttt
3301 ggacgaatag tcttgtcaac atacgggttt gacaaggctg acactgtggt
3351 gggcgaattg tttatacagt acacgattgt gctgagtgac ccaaccaaga
3401 cggccaaaat ttcacaggca agcaacgata aggtgtcgga cggaccaacg
3451 tatgtggtcc cttcggtcaa tggcaacgag ctacaactaa gagtggtagc
3501 agctgggaaa tggtgcatta tagtgcgggg tacggttgag ggaggcttca
3551 ccaaacccac acttattggg ccaggaatca gcggtgatgt ggactatgaa
3601 agtgccagac ctatcgccat ttgtgaattg gtgacacaaa tggagggcca
3651 gatattgaaa atcaacaaaa cctcagcaga acaaccactc caatgggttg
3701 tttataggat gtgaatgcaa cagaaaagtt tgttagacac acacggcggg
3751 acgtgttgct ggagctgcca ctccgcccaa gatggatcga tattaaccat
3801 ctttggcaac agcgtgcgtg actaattgaa cctagtaatt gcatagcatt
3851 cgactgtaac ctgttctctg ctgaacgcga gggtggcctc gtgatcccaa
3901 accataaaag aaaccaactt gttggtggaa gggcttggaa gtaggatcaa
3951 ccactgttta ttaattaggg gtgggagtat tcactgtact ctttccccgc
4001 cc