Sequence of DPV Turnip mosaic virus

Turnip mosaic virus genomic RNA for partial viral polyprotein, isolate Hangzhou

ACC No: AJ307037

Dated: 2002-06-03 | Length: 1709 | CRC: -1234394376

                !!NA_SEQUENCE 1.0
ID   TMO307037  standard; RNA; VRL; 1709 BP.
XX
AC   AJ307037;
XX
SV   AJ307037.1
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Turnip mosaic virus genomic RNA for partial viral polyprotein, isolate
DE   Hangzhou
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1709
RA   Adams M.J.;
RT   ;
RL   Submitted (09-MAY-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Variation between Turnip mosaic virus isolates in Zhejiang province, China
RT   and evidence for recombination";
RL   J. Phytopathol. 150:142-145(2002).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1709
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12230"
FT                   /note="crimple sample"
FT                   /virion
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="Hangzhou"
FT                   /specific_host="chinese white cabbage"
FT   CDS             <1. .1500
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAC85178.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNG
FT                   DDLLLSVHPEYEYILDTMANNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKL
FT                   EPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQ
FT                   EGKAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDYEDGVEACVYHQAGETLDAGLTD
FT                   EQKQAEKEKKEREKAEKERERQKQLALKKGRNVAQEEGERDKEVNAGTSGTFSVPRLKS
FT                   LTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKM
FT                   QIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVA
FT                   EAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALR
FT                   GANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .633
FT                   /product="NIb protein"
FT   mat_peptide     634. .1497
FT                   /product="coat protein"
FT   3'UTR           1501. .1709
XX
SQ   Sequence 1709 BP; 527 A; 343 C; 445 G; 394 T; 0 other;

 AJ307037  Length: 1709  June 18, 2002 10:23  Type: N  Check: 5673  ..

       1  gggaacaata gtgggcaacc atcgactgtt gtagacaaca cgctcatggt
      51  catactggct gtcaactatt cactcaagaa aagtggaatt ccaagtgagc
     101  tacgcgacag catcatcaga ttcttcgtca acggagatga tttactgcta
     151  agcgtacacc cagagtatga gtatatcctt gacactatgg caaacaactt
     201  tcgtgaactg ggtctgaagt atactttcga ctcaaggacc agggaaaaag
     251  gagacctttg gtttatgtcg caccaagggc acaaaagaga gggaatctgg
     301  attcccaagc ttgagccaga gcgaatagta tcgattctag aatgggatcg
     351  gtcgaaagag ccatgccatc gactagaggc aatctgcgca gcgatgattg
     401  agtcgtgggg atacgacaag ttgactcacg agatacgcaa gttttacgcg
     451  tggatgattg aacaagctcc atttagctcc ctagcacaag aagggaaagc
     501  tccttacata gcggaaacag cgctgaggaa gctctacctt gataaggaac
     551  cagctcaaga ggatctcacc cattatttgc aagcaatctt tgaagattat
     601  gaagatggtg ttgaggcttg tgtttatcac caggcaggtg aaacgcttga
     651  tgcaggtttg acagacgagc aaaagcaggc ggagaaggag aagaaggaga
     701  gagagaaggc agaaaaggaa cgagagagac agaagcagtt ggcactcaag
     751  aaaggcagga atgttgcaca agaagaggga gaacgcgaca aggaagtaaa
     801  cgctggaacc tctggaactt tcagtgtacc cagacttaag agtctgacaa
     851  gcaagatgcg cgtgccaaga tacgagcaaa gagtggctct aaacctcgat
     901  catctaatcc tatacacgcc ggagcagacg gatttatcca acacacgttc
     951  aacgcgaaag cagtttgaca catggtttga aggcgtaatg gctgattacg
    1001  aactgacgga ggacaaaatg caaatcattc tcaatggttt aatggtctgg
    1051  tgcattgaga atggaacctc cccgaacata aacggaatgt gggtgatgat
    1101  ggacggcgat gatcaggtgg aattcccgat caaaccgctc attgaccacg
    1151  ccaaacccac atttaggcag ataatggccc atttcagtga cgtagctgaa
    1201  gcgtacattg aaaagcgtaa ccaagaccga ccatacatgc cacgatatgg
    1251  tcttcagcgc aatttaaccg acatgagctt agctcgatac gcgtttgatt
    1301  tctatgaaat gacttctaga actccaatac gtgcgagaga agcacacatc
    1351  cagatgaaag cagcagcact gcgtggcgca aataacaatt tgttcggctt
    1401  ggatggaaac gttggtacaa cggtagagaa cacggagagg catacgaccg
    1451  aggacgttaa tcggaacatg cataacttac ttggcgttaa ggggttatga
    1501  agttgtgtgc tggtagacta taagtattta agtttactcg ttagtattct
    1551  cgcttatggg aaatatgtaa gtttgttaaa gcagccagtg tgacttcgtc
    1601  atgtgtgttg ttgttacttt ctatattttc gccgaacatt ttattggtgt
    1651  tagcgcatgt ggtgaggatc gtcctcgatt gccttaacat ttgataggat
    1701  gcaagggac