Sequence of DPV Cardamom mosaic virus

Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA, isolate Appangala

ACC No: AJ308472

Dated: 2011-08-25 | Length: 1034 | CRC: 1155166722

                ID   AJ308472; SV 1; linear; genomic RNA; STD; VRL; 1034 BP.
XX
AC   AJ308472;
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DT   11-FEB-2001 (Rel. 66, Created)
DT   25-AUG-2011 (Rel. 109, Last updated, Version 4)
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DE   Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA,
DE   isolate Appangala
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KW   coat protein; cp gene.
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OS   Indian cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus.
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RN   [1]
RP   1-1034
RA   Usha R.;
RT   ;
RL   Submitted (07-FEB-2001) to the INSDC.
RL   Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL   Madurai, Tamil Nadu 625021, INDIA.
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RN   [3]
RX   DOI; 10.1023/A:1011191614839.
RX   PUBMED; 11556406.
RA   Jacob T., Usha R.;
RT   "3'-Terminal sequence analysis of the RNA genome of the Indian isolate of
RT   cardamom mosaic virus: a new member of genus Macluravirus of potyviridae";
RL   Virus Genes 23(1):81-88(2001).
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RN   [4]
RA   Jacob T., Jebasingh T., Venugopal M.N., Usha R.;
RT   "High genetic diversity in the coat protein and 3 untranslated regions
RT   among geographical isolates of Cardamom mosaic virus from south India";
RL   J. Biosci. 28(5):589-595(2003).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1034
FT                   /organism="Indian cardamom mosaic virus"
FT                   /host="cardamom"
FT                   /isolate="Appangala"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Karnataka"
FT                   /tissue_type="leaves"
FT                   /db_xref="taxon:152006"
FT   CDS             <1. .816
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /function="virus coat"
FT                   /db_xref="GOA:Q998T9"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q998T9"
FT                   /protein_id="CAC29000.1"
FT                   /translation="APLAPMTGQQHAENPPQPVESFDAQQQDFSPSGGDDDTDIQWRIP
FT                   PTPRRLSHFNNPRVKGKRIWNRRIINSIAKEQFTQSSQLATTLQFERWAEDVRKSLGTP
FT                   NEDDFQIYLTSWCLWCANNGTSSEVDVNQTMEIHSGGKYSTIPIAIFVEPAVQNGGLRK
FT                   IMRHLSDITSQILAKGGKMTAWGTKRGYTQLAMIPYAFDFCVQTNGMPKTVREQLNQGK
FT                   AAAIGSGYQRVMLLDGKVQRSKTSYERHVDTDVDEFEHGSMGEPRATLY"
XX
SQ   Sequence 1034 BP; 322 A; 217 C; 241 G; 254 T; 0 other;

aj308472 Length: 1034  25-AUG-2011  Type: N  Check: 160  ..

       1  gcaccgcttg caccaatgac aggccagcaa catgcggaaa acccgccgca
      51  accggttgag agctttgatg ctcagcaaca agatttttca cctagcggcg
     101  gtgatgacga cacggacatt cagtggagaa tacccccaac accaaggagg
     151  ttgagtcact tcaacaaccc acgcgtgaaa ggtaaaagga tttggaacag
     201  aaggataatc aacagcatcg caaaggaaca gttcacacaa tcatcacaat
     251  tagcaacaac tttgcagttt gagagatggg ctgaagatgt taggaagagt
     301  cttggcacac caaatgaaga cgactttcag atctatttaa catcatggtg
     351  tttgtggtgc gccaacaacg gaacctcttc agaagttgac gtcaaccaaa
     401  ccatggaaat tcactcaggt gggaagtact ccacaatacc aatcgccatc
     451  tttgttgaac cagcagtgca aaacggaggg cttcggaaaa ttatgagaca
     501  tctcagtgat attacatcac aaatactagc caaaggagga aaaatgacgg
     551  catggggaac aaagagaggt tacacacagc ttgcaatgat accatacgct
     601  tttgattttt gcgttcaaac gaatgggatg cccaaaacag tgcgcgagca
     651  attaaatcaa ggaaaagctg ctgcgattgg ttcaggttac cagcgagtga
     701  tgctactaga cgggaaagtc cagcgaagca agacgagtta tgagaggcat
     751  gtcgacactg atgtcgatga atttgaacat ggctcaatgg gtgagccacg
     801  agcaactcta tattgaacat atcagtatgt caatttagtg tgtttactaa
     851  tatgcactta ttttatataa ttagatgttt tcttttcttg ttcgctgtgt
     901  ctataggttc aatgggagtt tttgtgggtt ttcttccaac gcctagtaac
     951  cctcaacaca gcattctaag gttgttctgg aggaacacct ggcaacgcac
    1001  ttgcgtagtt tatcctatta ccgtagaagg ttat