Sequence of DPV Cardamom mosaic virus

Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA, isolate Sirsi

ACC No: AJ308473

Dated: 2011-08-25 | Length: 1019 | CRC: 1865858976

                
ID   AJ308473; SV 1; linear; genomic RNA; STD; VRL; 1019 BP.
XX
AC   AJ308473;
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DT   11-FEB-2001 (Rel. 66, Created)
DT   25-AUG-2011 (Rel. 109, Last updated, Version 4)
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DE   Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA,
DE   isolate Sirsi
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KW   coat protein; cp gene.
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OS   Indian cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus.
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RN   [1]
RP   1-1019
RA   Usha R.;
RT   ;
RL   Submitted (07-FEB-2001) to the INSDC.
RL   Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL   Madurai, Tamil Nadu 625021, INDIA.
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RN   [3]
RX   DOI; 10.1023/A:1011191614839.
RX   PUBMED; 11556406.
RA   Jacob T., Usha R.;
RT   "3'-Terminal sequence analysis of the RNA genome of the Indian isolate of
RT   cardamom mosaic virus: a new member of genus Macluravirus of potyviridae";
RL   Virus Genes 23(1):81-88(2001).
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RN   [4]
RA   Jacob T., Jebasingh T., Venugopal M.N., Usha R.;
RT   "High genetic diversity in the coat protein and 3 untranslated regions
RT   among geographical isolates of Cardamom mosaic virus from south India";
RL   J. Biosci. 28(5):589-595(2003).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1019
FT                   /organism="Indian cardamom mosaic virus"
FT                   /host="cardamom"
FT                   /isolate="Sirsi"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Karnataka"
FT                   /tissue_type="leaves"
FT                   /db_xref="taxon:152006"
FT   CDS             <1. .477
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /function="virus coat"
FT                   /note="prematurely truncated"
FT                   /db_xref="GOA:Q998T8"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q998T8"
FT                   /protein_id="CAC29001.1"
FT                   /translation="APLAPMTTPQRPVAQPQPVNELSDQSRGLSLGEGDTDGDADIQWR
FT                   IPPTPKRLSHFNNPRVKGKRIWNRKIINSIAKEQFTQSSQLATTLQFERWAESVRKSLA
FT                   PPNEDDFQIYLTSWCLWCANNGTSSEVDVNQNMEIHSGGQYATVPISIFVEPAV"
XX
SQ   Sequence 1019 BP; 307 A; 226 C; 236 G; 250 T; 0 other;

aj308473 Length: 1019  25-AUG-2011  Type: N  Check: 3312  ..

       1  gcaccgcttg caccaatgac aacaccgcag agaccagtgg cccaaccaca
      51  accagtcaat gagctcagcg accagtcacg aggcctgtcc ctgggtgaag
     101  gggacactga tggtgatgca gatattcagt ggagaattcc cccaacacca
     151  aagcgattga gtcacttcaa caacccacga gtcaagggta agagaatttg
     201  gaataggaag atcataaaca gcattgccaa agaacaattc acacagtcat
     251  cccagcttgc aacgactttg caatttgagc gatgggctga gagtgtgagg
     301  aaaagtttgg caccaccaaa tgaggacgac tttcaaattt atctcacttc
     351  atggtgtttg tggtgcgcta acaatggaac gtcatctgaa gttgacgtaa
     401  atcagaacat ggaaatccac tcgggcgggc aatacgcaac agtcccaatt
     451  tcaatctttg ttgagcccgc cgtatagaat ggtgggctgc ggaaaatcat
     501  gcggcatctc agcgatatca cctcacaaat acttgccaaa ggagggaaga
     551  tgactgcatg gggaactaaa agaggataca cacagctagc catgatacca
     601  tatgcttttg atttttgtgt ccaaacaaat gggatgccaa aaacaataag
     651  ggaacaatta aatcaaggaa aggctgctgc aattgggtct ggacaccaac
     701  gtgttatgtt acttgatgga aaagttcagc gcagccgaac aagttatgaa
     751  cgacatgtcg acactgatgt cgatgaattt gagcatggct ataccgctga
     801  gtcacgcgca acactctatt agtcacattc gtgttaatac agtgtgctta
     851  gttatttgtt tcttgttttt attctactat gtgcttatag gttcaatggg
     901  agtttttgtg ggttttctcc caacgcctag caaccctcag cacagtactt
     951  aaagttgctc tggatgagca cttggtgaca caccatgtca cttatcctat
    1001  cgccatagaa ggtaataat