Sequence of DPV Cardamom mosaic virus

Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA, (India: Madikeri)

ACC No: AJ308474

Dated: 2011-08-25 | Length: 1034 | CRC: 1503372656

                
ID   AJ308474; SV 1; linear; genomic RNA; STD; VRL; 1034 BP.
XX
AC   AJ308474;
XX
DT   11-FEB-2001 (Rel. 66, Created)
DT   25-AUG-2011 (Rel. 109, Last updated, Version 5)
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DE   Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA,
DE   (India: Madikeri)
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KW   coat protein; cp gene.
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OS   Indian cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus.
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RN   [1]
RP   1-1034
RA   Usha R.;
RT   ;
RL   Submitted (07-FEB-2001) to the INSDC.
RL   Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL   Madurai, Tamil Nadu 625021, INDIA.
XX
RN   [3]
RX   DOI; 10.1023/A:1011191614839.
RX   PUBMED; 11556406.
RA   Jacob T., Usha R.;
RT   "3'-Terminal sequence analysis of the RNA genome of the Indian isolate of
RT   cardamom mosaic virus: a new member of genus Macluravirus of potyviridae";
RL   Virus Genes 23(1):81-88(2001).
XX
RN   [4]
RA   Jacob T., Jebasingh T., Venugopal M.N., Usha R.;
RT   "High genetic diversity in the coat protein and 3 untranslated regions
RT   among geographical isolates of Cardamom mosaic virus from south India";
RL   J. Biosci. 28(5):589-595(2003).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1034
FT                   /organism="Indian cardamom mosaic virus"
FT                   /host="cardamom"
FT                   /mol_type="genomic RNA"
FT                   /country="India: Madikeri"
FT                   /country="India:Karnataka"
FT                   /tissue_type="leaves"
FT                   /db_xref="taxon:152006"
FT   CDS             <1. .816
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /function="virus coat"
FT                   /db_xref="GOA:Q998T7"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q998T7"
FT                   /protein_id="CAC29002.1"
FT                   /translation="APLAPMTGQQRAESSPQPVESFDAQQQDFAPSGGDDDTDIQWRIP
FT                   PTPRRLSHFNNPRVKGKRIWNRKIINSIAKEQFTQSSQLATTLQFERWAEDVRKSLGTP
FT                   NEDDFQIYLTSWCLWCANNGTSSEVDVNQTMEIHSGGKYSTVPIAIFVEPAVQNGGLRK
FT                   IMRHLSDITSLILAKGGKMTAWGTKRGYTQLAMIPYAFDFCVQTNGMPKTVREQLNQGK
FT                   AAAIGSGYQRVMLLDGKVQRSKTSYERHVDTDVDEFEHGSMGEPRATLY"
XX
SQ   Sequence 1034 BP; 321 A; 213 C; 243 G; 257 T; 0 other;

aj308474 Length: 1034  25-AUG-2011  Type: N  Check: 2072  ..

       1  gcaccgcttg caccaatgac aggccagcaa cgtgcggaaa gctcgccgca
      51  accggttgag agctttgatg ctcagcaaca agattttgca cccagcggcg
     101  gtgatgacga cacggacatt cagtggagaa tacccccaac accaaggagg
     151  ttgagtcact tcaacaaccc acgcgtgaaa ggtaaaagga tttggaacag
     201  aaagataatc aacagcattg caaaggaaca gttcacacaa tcatcacaat
     251  tagcaacaac tttgcagttt gagagatggg ctgaagatgt taggaagagt
     301  cttggcacac caaatgaaga tgactttcag atctatttaa catcatggtg
     351  tttgtggtgt gctaacaacg gaacctcttc agaagttgac gtcaaccaaa
     401  ccatggaaat tcactcaggt gggaagtact ccacagtacc aatcgccatc
     451  tttgttgaac cagcagtgca aaacggaggg cttcggaaaa ttatgagaca
     501  tctcagtgat attacatcac taatactagc caaaggagga aaaatgacgg
     551  catggggaac aaagagaggt tacacacagc ttgcaatgat accatacgct
     601  tttgattttt gcgttcaaac gaatgggatg cccaaaacag tgcgcgagca
     651  attaaatcaa ggaaaagctg ctgcgattgg ttcaggttac cagcgagtga
     701  tgctactaga cgggaaagta cagcgaagca agacgagtta tgagaggcat
     751  gtcgacactg atgtcgatga atttgaacat ggctcaatgg gtgagccacg
     801  agcaactcta tattgaacat atcagtatgt caatttagtg tgtttactaa
     851  tatgcactta tcttatataa ttagatgttt tcttttcttg ttcgctgtgt
     901  ctataggttc aatgggagtt tttgtgggtt ttcttccaac gcctagtaac
     951  cctcaacaca gcattctaag gttgttctgg aggaacacct ggcaacgcac
    1001  ttgcgtagtt tatcctatta ccatagaagg ttat