Sequence of DPV Cardamom mosaic virus
Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA, (India: Thalathamane)
ACC No: AJ308475
Dated: 2011-08-25 | Length: 1034 | CRC: 1671787535
ID AJ308475; SV 1; linear; genomic RNA; STD; VRL; 1034 BP.
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AC AJ308475;
XX
DT 11-FEB-2001 (Rel. 66, Created)
DT 25-AUG-2011 (Rel. 109, Last updated, Version 5)
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DE Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA,
DE (India: Thalathamane)
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KW coat protein; cp gene.
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OS Indian cardamom mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Macluravirus.
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RN [1]
RP 1-1034
RA Usha R.;
RT ;
RL Submitted (07-FEB-2001) to the INSDC.
RL Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL Madurai, Tamil Nadu 625021, INDIA.
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RN [3]
RX DOI; 10.1023/A:1011191614839.
RX PUBMED; 11556406.
RA Jacob T., Usha R.;
RT "3'-Terminal sequence analysis of the RNA genome of the Indian isolate of
RT cardamom mosaic virus: a new member of genus Macluravirus of potyviridae";
RL Virus Genes 23(1):81-88(2001).
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RN [4]
RA Jacob T., Jebasingh T., Venugopal M.N., Usha R.;
RT "High genetic diversity in the coat protein and 3 untranslated regions
RT among geographical isolates of Cardamom mosaic virus from south India";
RL J. Biosci. 28(5):589-595(2003).
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FH Key Location/Qualifiers
FH
FT source 1. .1034
FT /organism="Indian cardamom mosaic virus"
FT /host="cardamom"
FT /mol_type="genomic RNA"
FT /country="India: Thalathamane"
FT /country="India:Karnataka"
FT /tissue_type="leaves"
FT /db_xref="taxon:152006"
FT CDS <1. .816
FT /codon_start=1
FT /gene="cp"
FT /product="coat protein"
FT /function="virus coat"
FT /db_xref="GOA:Q998T6"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:Q998T6"
FT /protein_id="CAC29003.1"
FT /translation="APLAPMTGQQHAENLPQPVESFDAQQQDFVPSGGDDDTDIQWRIP
FT PTPRRLSHFNNPRVKGKRIWNRKIINSIAKEQSTQSSQLATTLQFERWAEDVRKSLGTP
FT NEDDFQIYLTSWCLWCANNGTSSEVDVNQTMEIHSGGKYSTIPTAIFVEPAVQNGGLRK
FT IMRHLSDITSQILAKGGKMTAWGTKRGYTQLAMVPYAFDFCVQTNGMPKTVREQLNQGK
FT AAAIGSGYQRVMLLDGKVQRSKTSYERHVDTDVDEFEHGSMGEPRATLY"
XX
SQ Sequence 1034 BP; 322 A; 215 C; 242 G; 255 T; 0 other;
aj308475 Length: 1034 25-AUG-2011 Type: N Check: 1180 ..
1 gcaccgcttg caccaatgac aggccagcaa catgcggaaa acctgccgca
51 accggttgag agctttgatg cccagcaaca agattttgta cctagcggcg
101 gtgatgacga cacggacatt cagtggagga tacccccaac accaaggagg
151 ttgagtcact tcaacaaccc acgcgtgaaa ggtaaaagga tttggaacag
201 aaagataatt aacagcatcg caaaggaaca gtccacacaa tcatcacaat
251 tagcaacaac tttgcagttt gagagatggg ctgaagatgt taggaagagt
301 cttggcacac caaatgaaga cgactttcag atttatttaa catcatggtg
351 tttgtggtgt gccaacaacg gaacctcttc agaagttgac gtcaaccaaa
401 ccatggaaat tcactcaggt gggaagtact ccacaatacc aaccgccatc
451 tttgttgaac cagcagtgca aaatggaggg cttcggaaaa ttatgagaca
501 tctcagtgat attacatcac aaatactagc caaaggagga aaaatgacgg
551 catggggaac aaagagaggt tacacacagc ttgcaatggt accatacgct
601 tttgattttt gcgttcaaac gaatgggatg cccaaaacag tgcgcgagca
651 attaaatcaa ggaaaagctg ctgcaattgg ttcaggttac cagcgagtga
701 tgctactaga cgggaaagtt cagcgaagca agacgagtta tgagaggcat
751 gtcgacactg atgtcgacga atttgaacat ggctcaatgg gtgagccacg
801 agcaactcta tattgaacat atcggtatgt caatttagtg tgtttacaaa
851 tatgcactta ttttatataa ttagatgttt tctttccttg ttcgctgttt
901 ctataggttc aatgggagtt tttgtgggtt ttcttccaac gcctagtaac
951 cctcaacaca gcattctaag gttgttctgg aggaacacct ggcaacgcac
1001 ttgcgtagtt tatcctatta ccgtagaagg ttat