Sequence of DPV Cardamom mosaic virus
Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA, isolate Vandiperiyar
ACC No: AJ308477
Dated: 2011-08-25 | Length: 1028 | CRC: -1958954125
ID AJ308477; SV 1; linear; genomic RNA; STD; VRL; 1028 BP.
XX
AC AJ308477;
XX
DT 11-FEB-2001 (Rel. 66, Created)
DT 25-AUG-2011 (Rel. 109, Last updated, Version 4)
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DE Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA,
DE isolate Vandiperiyar
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KW coat protein; cp gene.
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OS Indian cardamom mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Macluravirus.
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RN [1]
RP 1-1028
RA Usha R.;
RT ;
RL Submitted (07-FEB-2001) to the INSDC.
RL Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL Madurai, Tamil Nadu 625021, INDIA.
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RN [3]
RX DOI; 10.1023/A:1011191614839.
RX PUBMED; 11556406.
RA Jacob T., Usha R.;
RT "3'-Terminal sequence analysis of the RNA genome of the Indian isolate of
RT cardamom mosaic virus: a new member of genus Macluravirus of potyviridae";
RL Virus Genes 23(1):81-88(2001).
XX
RN [4]
RA Jacob T., Jebasingh T., Venugopal M.N., Usha R.;
RT "High genetic diversity in the coat protein and 3 untranslated regions
RT among geographical isolates of Cardamom mosaic virus from south India";
RL J. Biosci. 28(5):589-595(2003).
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FH Key Location/Qualifiers
FH
FT source 1. .1028
FT /organism="Indian cardamom mosaic virus"
FT /host="cardamom"
FT /isolate="Vandiperiyar"
FT /mol_type="genomic RNA"
FT /country="India:Kerala"
FT /tissue_type="leaves"
FT /db_xref="taxon:152006"
FT CDS <1. .822
FT /codon_start=1
FT /gene="cp"
FT /product="coat protein"
FT /function="virus coat"
FT /db_xref="GOA:Q998T4"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:Q998T4"
FT /protein_id="CAC29005.1"
FT /translation="APLAPMTEQAGVGSQPQPTETVNNQFGDLPPGEGGDGDGADIQWR
FT IPPTPKTLNHFHNPRVKGRRIWNGRIINSIAKEQFTQSSQLATTMQFEKWAESVRKSLG
FT TPNEGDFQIYLTSWCLWCANNGTSSEVDVNQNMEIHSGGSFSTVPISIFVEPAVQNGGL
FT RKIMRHLSEVTSQILAKGGKMTAWGTKRGYTQLAMIPYAFDFCVQTNGMPKTVREQLNQ
FT GKAAAIGSGHQRVMLLDGKVQRIKTSYERHVDTDVDEFEHGPAAESHATLY"
XX
SQ Sequence 1028 BP; 311 A; 201 C; 241 G; 275 T; 0 other;
aj308477 Length: 1028 25-AUG-2011 Type: N Check: 352 ..
1 gcaccgcttg caccaatgac ggaacaagca ggagttggta gccaaccgca
51 accaaccgaa acagttaaca atcaatttgg cgatctgcct ccaggtgagg
101 gtggggatgg agatggtgcg gatattcaat ggagaattcc acctacacca
151 aagacgttga accattttca caacccacgc gttaagggta ggcgaatttg
201 gaatggaaga atcataaata gtatcgcaaa ggagcaattc acacaatcat
251 ctcaactcgc cacaacaatg caattcgaaa aatgggctga aagtgtcagg
301 aaaagtcttg gaactccaaa tgaaggtgac ttccaaattt atttaacatc
351 gtggtgcctc tggtgtgcaa ataatggaac gtcctcagaa gttgatgtga
401 atcagaatat ggaaattcac tcaggtggct cattttcaac agttccgata
451 tcaatttttg ttgaaccagc agttcagaat ggagggctta ggaagatcat
501 gcggcacctt agtgaagtta cctcacaaat acttgcaaaa gggggaaaga
551 tgacagcatg gggaactaag agaggttaca cgcagcttgc aatgattccc
601 tatgcttttg atttttgtgt tcaaacaaat gggatgccaa agacggttcg
651 tgaacaactg aatcaaggaa aagcagcagc aattggatcc ggacaccagc
701 gcgtcatgct gcttgatgga aaagtgcagc gtattaaaac gagttatgag
751 agacatgtcg acactgatgt tgacgagttt gaacatggac ctgctgctga
801 atcacacgca acattgtatt agtcataact ttatgctatt actttgtgtt
851 cactactttt aagctgtttt attatttctt ttaataacgt tttgcactta
901 caagttcaat gggagttttt gtgggttttc tcccaacgct tggcaaccct
951 cagtgcagta gctaaggttg ctctggatga gcatctggca acatgtgatg
1001 ttgtttatcc tattaccata gaaggtgt