Sequence of DPV Carnation mottle virus

Carnation mottle virus p7 gene, p9 gene and cp gene, genomic RNA, isolate isr-2

ACC No: AJ309501

Dated: 2005-04-15 | Length: 1382 | CRC: -1116852528

                !!NA_SEQUENCE 1.0
ID   CMO309501  standard; genomic RNA; VRL; 1382 BP.
XX
AC   AJ309501;
XX
SV   AJ309501.1
XX
DT   30-JAN-2001 (Rel. 66, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE   Carnation mottle virus p7 gene, p9 gene and cp gene, genomic RNA, isolate
DE   isr-2
XX
KW   coat protein; cp gene; movement protein; p7 gene; P9 gene.
XX
OS   Carnation mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC   Carmovirus.
XX
RN   [1]
RP   1-1382
RA   Pallas V.;
RT   ;
RL   Submitted (29-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL   Pallas V., Biologia del estres, Instituto de Biologia Molecular y Celular
RL   de Plantas-CSIC, Avenida de los Naranjos s/n, 46022 Valencia, SPAIN.
XX
RN   [4]
RX   DOI; 10.1007/s007050170051.
RX   MEDLINE; 21578632.
RX   PUBMED; 11722023.
RA   Canizares M.C., Marcos J.F., Pallas V.;
RT   "Molecular varaibility of twenty-one geographically distinct isolates of
RT   Carnation mottle virus (CarMV) and phylogenetic relationships within the
RT   Tombusviridae family";
RL   Arch. Virol. 146(10):2039-2051(2001).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1382
FT                   /country="Israel"
FT                   /db_xref="taxon:11986"
FT                   /mol_type="genomic RNA"
FT                   /organism="Carnation mottle virus"
FT                   /isolate="isr-2"
FT                   /variety="917MFJ"
FT   CDS             1. .186
FT                   /db_xref="GOA:Q98VJ0"
FT                   /db_xref="InterPro:IPR007982"
FT                   /db_xref="UniProt/TrEMBL:Q98VJ0"
FT                   /note="The central region contains an RNA-binding motif"
FT                   /gene="p7"
FT                   /product="movement protein"
FT                   /protein_id="CAC27480.1"
FT                   /translation="MDIEPEVPVVGKQTLAGNRGKQKTRRSVAKDAIRKPASDSTNGGN
FT                   WVNVADKIEVHIHFNF"
FT   CDS             92. .346
FT                   /db_xref="UniProt/TrEMBL:Q98VK4"
FT                   /gene="p9"
FT                   /product="movement protein"
FT                   /protein_id="CAC27481.1"
FT                   /translation="MPSANLHLIVLTGVIGLMLLIRLRCTFTSTFSLPPLVTLNQIIAL
FT                   SFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK"
FT   CDS             336. .1382
FT                   /db_xref="GOA:Q99A04"
FT                   /db_xref="HSSP:2TBV"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="UniProt/TrEMBL:Q99A04"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="CAC27482.1"
FT                   /translation="MENKGEKIAMNSTVQTLAQKGDKLAVKLVTRGWASLSTNQKRRAE
FT                   MLAGYTPAVLAFTPRRPRMTNPPPRTSRNSPGQAGKSMTMSKTELLSTVKGTTGVTPSF
FT                   EDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTP
FT                   PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRIVLSTYGFD
FT                   KADTVVGGLFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK
FT                   WCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAVCELVTQMEGQILKITKTSAEQP
FT                   LQWVVYRM"
XX
SQ   Sequence 1382 BP; 401 A; 313 C; 361 G; 307 T; 0 other;

 AJ309501  Length: 1382  April 19, 2005 08:56  Type: N  Check: 3575  ..

       1  atggatattg aaccggaagt accagtagtt ggaaagcaaa cgctcgctgg
      51  gaatagggga aaacagaaga cacgtagatc ggtggccaag gatgccatcc
     101  gcaaacctgc atctgatagt actaacgggg gtaattgggt taatgttgct
     151  gataagattg aggtgcacat tcacttcaac ttttagtttg cccccactgg
     201  taactttaaa tcagataata gcgttgtcat tttgtggtct tctattaaac
     251  agcatctctc gggcagaaag agcttgctat tacaactact ctgttgatag
     301  ttctaagcaa caacacattt caataagtac accaaatgga aaataaagga
     351  gaaaagatcg cgatgaattc cactgtgcaa acattggcgc agaaggggga
     401  caagttagcc gtgaagttgg tgacaagagg gtgggcctct ctgagtacga
     451  accagaagag gagagctgaa atgcttgctg gatacactcc agcggtccta
     501  gccttcacac cccgacgacc acggatgacg aaccctcctc caagaaccag
     551  taggaattca ccaggacaag ctggaaagtc catgacgatg agtaagaccg
     601  aactattgag caccgtcaaa ggtaccacgg gtgttacccc aagctttgaa
     651  gactgggtcg tttccccccg aaacgtagcc gtcttccctc aactctcgct
     701  gctggcgacg aacttcaaca agtaccgcat cactgcgctc actgtgaagt
     751  actcacccgc gtgcagcttc gagaccaatg ggagggtggc tctgggattc
     801  aacgatgacg cttcggacac accaccaacc accaaggttg gattttacga
     851  tctgggcaaa catgtggaaa ctgctgcaca gacagctaag gatctagtga
     901  taccagtaga cggtaaaacc cggttcatca gggactcggc tagtgatgat
     951  gccaaactag tcgattttgg acgaatagtc ttgtcaacat acgggtttga
    1001  caaggctgat actgtggtgg gcggattgtt tatacagtac acgattgtgc
    1051  tgagtgaccc aaccaagacg gccaaaattt cacaggcaag taacgataag
    1101  gtgtcggacg gaccaacgta tgtggtccct tcggttaatg gcaacgagct
    1151  acaactaaga gtggtagccg ctgggaaatg gtgcattata gtgcggggta
    1201  cggttgaggg aggcttcacc aaacccacac ttattgggcc gggaatcagc
    1251  ggtgatgtgg actatgaaag tgccagacct atcgccgttt gtgaattggt
    1301  gacacaaatg gagggccaga tattgaaaat caccaagacc tcagcagaac
    1351  aaccactcca atgggttgtt tataggatgt ga