Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus partial genomic RNA for polyprotein gene, isolate Henan

ACC No: AJ310108

Dated: 2002-06-03 | Length: 1839 | CRC: -1752884634

                !!NA_SEQUENCE 1.0
ID   SMO310108  standard; RNA; VRL; 1839 BP.
XX
AC   AJ310108;
XX
SV   AJ310108.1
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus partial genomic RNA for polyprotein gene, isolate
DE   Henan
XX
KW   coat protein; NIb polymerase protein; polyprotein.
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1839
RA   Adams M.J.;
RT   ;
RL   Submitted (13-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of potyviruses from sugarcane and maize in China";
RL   Arch. Virol. 147:1237-1246(2002).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1839
FT                   /country="China:Henan"
FT                   /db_xref="taxon:12224"
FT                   /virion
FT                   /organism="Sugarcane mosaic virus"
FT                   /specific_host="maize"
FT   CDS             <1. .1584
FT                   /codon_start=1
FT                   /note="ORF1"
FT                   /product="polyprotein"
FT                   /protein_id="CAC84097.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGVKEEEINNCCRMFANG
FT                   DDLLLAVHPDFEHILDGFQNHFGNLGLNFEFTSRTRGKSELWFMSTRGIKCEGVYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLVQEIRKFYAWLLEMQPFANLAK
FT                   EGLAPYIAETALRNLYLGTGIKEEEIEKYFKQFAKDLPGYIEDYNEDVFHQSGTVDAGA
FT                   QGGGSGSGTTPPATGSGTGTRTPSTGAPAQGNTPPASGGSSGNNGGGQSGSNGTGGQAG
FT                   SSGAGGQRDKDVDAGSTGKISVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDIS
FT                   NTRATKEEFDRWYDAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGNWTMMDGDEQ
FT                   RVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYA
FT                   FDFYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNM
FT                   HSLLGVQQHH"
FT   mat_peptide     <1. .642
FT                   /product="NIb polymerase protein"
FT   mat_peptide     643. .1581
FT                   /product="coat protein"
FT   3'UTR           1585. .1839
XX
SQ   Sequence 1839 BP; 574 A; 382 C; 460 G; 423 T; 0 other;

 AJ310108  Length: 1839  June 18, 2002 10:23  Type: N  Check: 7196  ..

       1  gggaataata gtgggcagcc gtcaacagtt gtagacaaca cactcatggt
      51  gatattagca tttaattatg caatgttatc aagtggtgtt aaagaagaag
     101  aaataaacaa ttgctgccga atgttcgcca atggtgatga tttgctactt
     151  gcagtgcatc cagatttcga acacatattg gacggatttc aaaatcactt
     201  tggaaaccta ggtctcaact ttgagtttac atcacgaaca agaggcaagt
     251  cagagttatg gttcatgtcc acacgaggta tcaaatgcga aggcgtctat
     301  ataccaaaac ttgagaaaga aagaatagtt gccatactcg agtgggatcg
     351  gtcaaactta cctgagcacc gtctcgaagc catttgtgca gccatggtag
     401  aggcatgggg atacccagac cttgtccaag agatacggaa attttatgcg
     451  tggcttctcg aaatgcaacc atttgcaaat ttagctaaag agggcctagc
     501  accatatatt gctgaaactg cactcagaaa tctgtatttg ggcacaggga
     551  tcaaggaaga agagattgag aaatatttca aacagtttgc caaagatctc
     601  cctggttata tagaagatta caacgaagat gttttccatc aatccggaac
     651  tgtggatgca ggagcccaag gagggggaag tggatctgga acaacgccac
     701  cagcaacagg tagtggaaca ggaacaagaa caccatctac tggagctcca
     751  gcacaaggca acacacctcc agcatcaggt ggatcatcag gaaacaatgg
     801  aggcggccaa tcaggttcaa acggcactgg aggccaagca ggctcaagcg
     851  gagcaggggg tcaaagagac aaagacgttg acgctggctc aacagggaag
     901  atatcagtgc caaagcttaa ggcaatgtcg aagaaaatgc gcctgccaaa
     951  ggcgaaagga aaagacgttt tacacttaga tttcctgtta acatataaac
    1001  cacaacagca agatatatca aacactagag caactaagga agagtttgat
    1051  agatggtacg atgccataaa gaaggagtac gaaattgatg acacacaaat
    1101  gacagttgtc atgagtggtc tcatggtatg gtgcatcgaa aatggttgct
    1151  caccaaacat aaacggaaat tggacgatga tggacggaga cgaacaaagg
    1201  gtttttccat taaagccagt cattgagaac gcatctccaa ctttccgaca
    1251  gataatgcat cattttagtg atgcagctga agcgtatata gagtaccgaa
    1301  actctacaga gcgatacatg ccaagatacg gtcttcagcg aaatctcacc
    1351  gactatagct tagcgcggta tgctttcgac ttctatgaaa tgacttcgcg
    1401  cacaccagct agagctaagg aagcccacat gcagatgaaa gccgcagcag
    1451  ttcgtggttc aaacacacgt ctgttcggtc tggacggaaa tgtcggcgag
    1501  actcaggaga atacagagag acacacagct ggcgacgtta gtcgcaacat
    1551  gcactctctg ttgggagtgc agcagcacca ctagtctcct ggaaaccctg
    1601  tttgcagtac ctatagtata ttactaaata gtatgttcgt gaggccttgc
    1651  ctcgtgtgta tgtgaggttc tacctcgtat ttactatttc agtatatgta
    1701  cttttagcgt gaaccagtct gcaggacaca gggttggacc cagtgtcttc
    1751  tggtgtagcg tgtactagcg tcgagccaat ggacggacgg caccgggagt
    1801  ggttttacca ttggtgctgc gagtctcttg gtgagagac