Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus partial genomic RNA for polyprotein gene, isolate Hebei

ACC No: AJ310115

Dated: 2002-06-03 | Length: 1915 | CRC: 1814004290

                !!NA_SEQUENCE 1.0
ID   SMO310115  standard; RNA; VRL; 1915 BP.
XX
AC   AJ310115;
XX
SV   AJ310115.1
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus partial genomic RNA for polyprotein gene, isolate
DE   Hebei
XX
KW   CI protein; polyprotein.
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1915
RA   Adams M.J.;
RT   ;
RL   Submitted (13-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of potyviruses from sugarcane and maize in China";
RL   Arch. Virol. 147:1237-1246(2002).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1915
FT                   /country="China:Hebei"
FT                   /db_xref="taxon:12224"
FT                   /virion
FT                   /organism="Sugarcane mosaic virus"
FT                   /isolate="Hebei"
FT                   /specific_host="maize"
FT   CDS             <1. .>1915
FT                   /codon_start=1
FT                   /note="ORF1"
FT                   /product="polyprotein"
FT                   /protein_id="CAC84104.1"
FT                   /translation="SVDVDEPLTLSTDKNPTIDFDTNQDLPADTFSNDVTFEDWWANQI
FT                   NNNRTVPHYRLGGKFVEFTRENAAMVSIELAHSNIEKEFLLRGAVGSGKSTGLPYHLSM
FT                   RGKVLLIEPTRPLAENVCRQLQGPPFNVSPTLQMRGLSTFGCTPITIMTSGFALHMYAN
FT                   DPDKISEYDFIIFDECHIMEAPAMAFYCLLKEYEYRGKIIEVSATPPGRECEFSTQHPV
FT                   DIHVCESLTQQQFVMELGTGSTADATKYGNNILVYVASYNDVGSLSHALTELKYSVIKV
FT                   DGRTMKQNTTGIVTNGTSSKKCFVVATNIIENGVTLDVDVVVDFGLKVTAELDVDNRAI
FT                   MYKRVSISYGERIQRLGRVGRNKPGTVIRIGKTMKGLQEIPAMIATEAAFMCFAYGLKV
FT                   ITHNVSTTHLAKCTVKQARTMMQFELSPFVMADLVKFDGSMHPQIHEALTKYKLRDSVI
FT                   MLRPNAIPKVNLHNWLTARDYNRIGCSLDLEDHVKIPYYIRGVPDKLYGKLYEIILQYS
FT                   PTSCYGRLSSACAGKVAYTLRTDPCSLPRTIAIINALITEEYAKRDHYRNMIANPSSSH
FT                   AFSLNGLVSMIASRYMKDHTKENIDKLVRVRDQLLEFQGTGMQFQDPSELMDIGALNTV
FT                   IHQ"
FT   mat_peptide     1. .1914
FT                   /product="CI protein"
XX
SQ   Sequence 1915 BP; 633 A; 382 C; 407 G; 493 T; 0 other;

 AJ310115  Length: 1915  June 18, 2002 10:23  Type: N  Check: 1549  ..

       1  agtgttgatg ttgatgaacc attgacacta agtactgata agaacccgac
      51  tatagatttt gatacaaatc aagacttgcc agcggataca tttagtaatg
     101  acgttacatt tgaggattgg tgggctaatc agattaacaa caacagaaca
     151  gtgccacact accgacttgg gggaaaattt gtagaattca caagagaaaa
     201  tgcagcaatg gtcagcattg aactcgctca ctcaaacatt gaaaaagaat
     251  tcttactcag aggagctgtt gggtcaggaa aatccacagg cttaccatac
     301  cacctcagta tgcgtggaaa agtgctattg atagaaccca ctcgaccatt
     351  agctgaaaac gtttgcaggc aattgcaagg acctccattt aacgtgagcc
     401  ccactttaca aatgcgaggt ttgagcacat ttggctgcac tcccatcacg
     451  ataatgacgt ctggattcgc attgcatatg tatgctaacg accctgacaa
     501  gatctctgaa tatgacttca tcatttttga tgaatgtcat atcatggaag
     551  cacctgcaat ggcattctat tgtttgctta aggagtacga ataccgagga
     601  aagataatag aagtttcagc aacaccacca ggacgagaat gtgagttttc
     651  aacccaacat ccagtggata tacatgtatg tgagagcttg acacaacagc
     701  aattcgtcat ggagcttgga acagggtcaa ccgctgatgc aaccaagtac
     751  ggtaataaca tattagtgta cgttgcaagt tacaatgacg taggttcttt
     801  atcccatgct ctaactgagc tcaagtattc agtaatcaaa gttgatggaa
     851  gaacaatgaa gcagaacacc acaggaattg taactaatgg aacatccagt
     901  aagaaatgct tcgttgtagc tacaaacatc attgagaatg gtgtgacgct
     951  agacgttgat gtcgttgtcg actttggact taaagtaaca gccgaactgg
    1001  atgttgataa cagggcaata atgtataaac gtgtgagcat atcttatggc
    1051  gagcgtattc agagacttgg aagagttgga aggaacaagc ccggaacagt
    1101  tatccgcatc gggaaaacaa tgaaaggttt gcaagaaatt ccagcgatga
    1151  tcgccactga agcggctttc atgtgtttcg catatggact gaaggtcata
    1201  acgcacaatg tatcaacaac acatttggca aaatgcaccg ttaaacaagc
    1251  cagaactatg atgcagtttg agctttcacc atttgtaatg gccgatctag
    1301  taaagtttga tggttctatg cacccacaaa tccatgaagc attaactaag
    1351  tataaattac gagattctgt aattatgcta agaccaaacg caataccaaa
    1401  ggtaaatctt cacaattggt taacggctcg tgattacaac agaataggct
    1451  gctcattaga ccttgaagat catgttaaaa taccatatta catacgagga
    1501  gttcctgaca agttgtacgg gaagttgtat gaaattatcc ttcaatacag
    1551  ccctacaagt tgctatggaa gactatcaag cgcttgtgca ggtaaggtag
    1601  catatacact gcgcactgat ccttgttcgt taccaagaac aatagctata
    1651  atcaacgcat taatcactga agagtatgca aagagggatc attacagaaa
    1701  catgatagcg aacccttcgt catcgcacgc cttttcactt aatgggctgg
    1751  tatccatgat cgcttctcga tacatgaaag atcacacgaa ggaaaacatt
    1801  gataaacttg taagagtgcg cgaccagcta cttgaattcc aaggcacagg
    1851  tatgcaattt caagatcctt cagaattgat ggacattggt gctttaaaca
    1901  cagttattca ccaag