Sequence of DPV Sorghum mosaic virus

Sorghum mosaic virus partial genomic RNA for polyprotein

ACC No: AJ310193

Dated: 2002-06-03 | Length: 1809 | CRC: 1646327811

                !!NA_SEQUENCE 1.0
ID   SMO310193  standard; RNA; VRL; 1809 BP.
XX
AC   AJ310193;
XX
SV   AJ310193.1
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Sorghum mosaic virus partial genomic RNA for polyprotein
XX
KW   CI protein; ORF1; ORF2; polyprotein.
XX
OS   Sorghum mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1809
RA   Adams M.J.;
RT   ;
RL   Submitted (28-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of potyviruses from sugarcane and maize in China";
RL   Arch. Virol. 147:1237-1246(2002).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1809
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:32619"
FT                   /virion
FT                   /organism="Sorghum mosaic virus"
FT                   /isolate="Xiangshan"
FT                   /specific_host="Sugarcane"
FT   CDS             <1. .>1809
FT                   /codon_start=1
FT                   /note="ORF1"
FT                   /product="polyprotein"
FT                   /protein_id="CAC84433.1"
FT                   /translation="LTLNTDKQLTIDFDTTQDLPADTFSNDVTFEQWWSNQLENNRTVP
FT                   HYRIGGEFAEFTRQNAATVSIGIAHNRIEKEFLLRGAVGSGKSTGLPYHLSQRGKVLLL
FT                   EPTRPLAENVCRQLQGPPFNVSPTLQMRGLSSFGSTPITIMTSGFALHMYANNPDKISN
FT                   YDYIIFDECHIMEAPAMAFYCLLKEYNFDGKIIKVSATPPGRECEFSTQYPVDIHVCEN
FT                   LTQNQFVLELGTGSKADATKYGNNILVYVASYSDVDSLARALTEHHYSVIKVDGRTMKQ
FT                   DTTGIHTNGTDARKCFVVATNIIENGVTLDVDVVADFGLKVSAELDVDNRAIMYRKVSI
FT                   SYGERIQRLGRVGRTKPGTIIRSGVTMKGSQEIPAMIATEAAFQCFAYGLKVITHNVST
FT                   TYLAKCTVKQARTMMHFELSPFIMSELVKFDGSMHPQIHEKLKKYKLRDSVIMLRTNAV
FT                   PYPNVHNWLTVKDYNKIGCNLELGEYIKIPYFVRGVSEKLYSEIYDIVLKYGSTNCCGR
FT                   LSSACAGKVAYTLRTDPYSLPRTIAIINRLICEEHAKREHYNTMISNPSSSHAFSLSGI
FT                   VNMLASRYMKDHSKENIEKLTRVKDQL"
FT   mat_peptide     <1. .>1809
FT                   /note="ORF2"
FT                   /product="CI protein"
XX
SQ   Sequence 1809 BP; 612 A; 331 C; 376 G; 490 T; 0 other;

 AJ310193  Length: 1809  June 18, 2002 10:22  Type: N  Check: 9263  ..

       1  ttaacgttga atactgataa gcagctaacg atagacttcg atacaacaca
      51  agatcttcca gcggacacat ttagtaatga tgtaactttt gagcaatggt
     101  ggtctaatca gttggaaaat aacagaacag ttccacacta ccgcattggc
     151  ggcgaattcg cagagttcac aagacaaaac gcagcaacag ttagcatagg
     201  gatagcacac aatcggatcg aaaaggaatt tctattgcgt ggagctgtgg
     251  gttcaggaaa atcaacagga ctgccgtatc atttgagtca acgaggaaaa
     301  gttcttttgc tggaaccaac tcgtcccttg gcagagaatg tttgtaggca
     351  gttacaggga cccccattta atgttagtcc aactttgcaa atgaggggtt
     401  taagttcttt tggttccact ccgataacca taatgacgtc gggattcgct
     451  ctacatatgt atgcaaacaa cccagacaaa attagtaact acgattatat
     501  catttttgat gaatgtcata taatggaagc accagcaatg gctttttact
     551  gtttacttaa ggaatacaat ttcgatggta aaatcataaa agtctcagcg
     601  accccaccag gaagagagtg cgaattctca actcagtatc cagtagatat
     651  acacgtttgt gaaaatttaa ctcaaaatca atttgttttg gaattgggca
     701  ctgggtctaa agcagacgca acgaaatatg gaaataacat tcttgtatat
     751  gttgcaagtt atagtgacgt agattcctta gcacgagcgc taacagaaca
     801  tcattactca gtaattaagg ttgacggaag aacaatgaaa caggacacaa
     851  caggaattca cacaaacggg actgatgcca gaaagtgctt cgtggtcgcc
     901  actaacatta ttgaaaatgg cgttacacta gatgtcgatg ttgtagcgga
     951  ttttggcctc aaagtttcgg ctgaactaga tgttgataat cgagcgataa
    1001  tgtatcgaaa ggttagtata tcgtatggtg aacgaattca gagacttgga
    1051  agagttggac gaactaaacc tgggactatc attagatcag gtgtgacaat
    1101  gaaaggatca caggagattc cagctatgat agccacagaa gcggcctttc
    1151  agtgttttgc atatggactc aaagttataa ctcataatgt ttcaacaacc
    1201  tatttggcaa aatgtactgt aaaacaagca agaactatga tgcattttga
    1251  actttcacct tttataatgt ctgagttagt taaatttgat ggttcaatgc
    1301  atccccaaat acatgaaaaa cttaagaaat acaaacttag ggattcagtt
    1351  ataatgctca gaacaaatgc cgtgccttac ccgaatgtcc acaactggtt
    1401  gaccgttaag gattacaata agataggatg caatcttgaa ttgggtgaat
    1451  acataaagat tccatatttc gttagaggtg tatcagaaaa gctatacagt
    1501  gaaatatatg atatcgttct taaatatggc tcaacaaatt gttgtggcag
    1551  actatcgagc gcctgtgcag ggaaagtggc atacactctg agaaccgatc
    1601  cttactcgtt accgcgaacg attgccatca taaacagatt aatctgtgaa
    1651  gagcatgcaa agagagagca ttacaataca atgatttcaa atccttcctc
    1701  ttcacacgct ttttcattga gtggaatagt taacatgctt gcttcaagat
    1751  atatgaaaga tcactcaaag gaaaatattg aaaaactcac aagagtgaaa
    1801  gatcagctc