Sequence of DPV Shallot yellow stripe virus

Shallot yellow stripe virus partial genomic RNA for viral polyprotein (ORF1), isolate Hangzhou

ACC No: AJ311370

Dated: 2002-02-05 | Length: 1607 | CRC: 1812881811

                !!NA_SEQUENCE 1.0
ID   SYE311370  standard; RNA; VRL; 1607 BP.
XX
AC   AJ311370;
XX
SV   AJ311370.1
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Shallot yellow stripe virus partial genomic RNA for viral polyprotein
DE   (ORF1), isolate Hangzhou
XX
KW   coat protein; NIb protein; viral polyprotein.
XX
OS   shallot yellow stripe virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1607
RA   Adams M.J.;
RT   ;
RL   Submitted (22-MAY-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China";
RL   Arch. Virol. 147:419-428(2002).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1607
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:62059"
FT                   /virion
FT                   /organism="shallot yellow stripe virus"
FT                   /isolate="Hangzhou"
FT                   /specific_host="Allium fistulosum var. caespitosum"
FT   CDS             <1. .1413
FT                   /codon_start=1
FT                   /note="ORF1"
FT                   /product="Polyprotein"
FT                   /protein_id="CAC85377.1"
FT                   /translation="GNNSGQPSTVVDNTLMVMLSVQYTLLKNNITFMEQDSIIRYFCNG
FT                   DDLLIATHPDHSHMLDSFTKHFADLGLEYDFSSRTTNREELYFMSHRGLLRDGIYIPKL
FT                   DKERIVSILEWDRAKEPEHRLEAICAAMVEAWGYDELLHEIRLFYKWVLEQAPYNLIAQ
FT                   TGKAPYIAETALKKLYMDEQATESELEKYIRLYQILDDRIPAPSYVSYQASESEDAANV
FT                   NTDKQVGKNKDKDRDVDVGTSGEFSVPKVKMLSDKMRLPRVGKKVILNGKHLLSYKPDQ
FT                   VDLYNTRATHAQFKTWYDAVKLEYELTDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMD
FT                   GDNQMEYPLSPIIDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLREYSL
FT                   ARYAFDFYEMNSKTPIRAKEAHMQMKAAAVRGVANRMFGLDGNISTDDENTERHTAADV
FT                   NKDHHTLLGLRM"
FT   mat_peptide     <1. .636
FT                   /note="ORF1"
FT                   /product="NIb protein"
FT   mat_peptide     637. .1410
FT                   /note="ORF1"
FT                   /product="Coat protein"
FT   3'UTR           1414. .1607
FT                   /note="ORF1"
XX
SQ   Sequence 1607 BP; 535 A; 283 C; 363 G; 426 T; 0 other;

AJ311370  Length: 1607  February 12, 2002 17:24  Type: N  Check: 2098  ..

       1  gggaacaata gtggtcagcc ttccacagtt gtggataaca cattgatggt
      51  gatgcttagt gttcaataca cattattaaa gaataatatt acatttatgg
     101  aacaagactc tataattaga tatttttgta acggtgacga tttgctcatt
     151  gcgactcatc cagaccacag tcatatgctg gactcgttca cgaaacactt
     201  tgctgatttg ggacttgaat acgatttttc gagtcggacc acgaatcgag
     251  aggaactata ttttatgtct catagaggct tgcttagaga tggtatttat
     301  atacccaaac ttgataaaga acgcatagtt tccatacttg agtgggatag
     351  agctaaagag ccagaacatc gattggaagc tatatgcgcc gctatggtag
     401  aagcgtgggg ttatgacgag ttgctacacg aaattaggtt attttataag
     451  tgggtattag agcaagctcc atacaattta atagcccaaa ctggaaaagc
     501  accgtacata gcagagactg cacttaagaa attgtatatg gatgaacaag
     551  caactgaaag tgagttggaa aagtacattc gactctatca aatacttgat
     601  gatcgcatac cagcaccaag ctatgtttca tatcaagcat cagagtcaga
     651  agatgctgca aatgtaaaca ccgataagca ggtcggaaag aacaaggaca
     701  aggacaggga cgttgatgtt ggcacgtcag gcgagttttc agttccaaag
     751  gttaaaatgt tgtcagataa aatgcgacta ccacgagtcg gaaagaaagt
     801  aatacttaat ggtaaacacc tcttatctta taaacccgac caggttgatt
     851  tatacaacac acgagcaaca cacgcacaat ttaagacgtg gtacgatgca
     901  gtaaaacttg agtatgaatt gacggatgaa caaatgaaga ttgtcatgaa
     951  tgggttgatg gtgtggtgca ttgagaatgg aacatcacaa aatttaacgg
    1001  gggtttggac aatgatggac ggagacaacc aaatggaata tccacttagt
    1051  cctattattg ataacgcaaa gccaacattt agacaaataa tggcacattt
    1101  cagtgacgca gctgaagcgt acattgaata cagaaatgcc acagaaaaat
    1151  acatgccccg gtatggactt cagcgaaact taagagaata cagcttagca
    1201  cgttacgcat tcgactttta tgagatgaat tcaaagacgc cgatccgcgc
    1251  aaaggaagct catatgcaga tgaaagcggc agcggttaga ggggtagcta
    1301  accgtatgtt tggcttggat ggtaacataa gcaccgatga tgagaacaca
    1351  gaacgacata cagcagctga tgtgaataag gatcatcaca cactgctcgg
    1401  tcttcgtatg taatatacat atatatattt gatatatagt gtcgtgcatt
    1451  atctttcgtt atatttgaat atgagcaaac atagtgtggt cacaccaccg
    1501  tttgtggcat agtatatgat ataacttcgc tagcattatt tgcaccatga
    1551  gacttagtgt ggtttaccac ggaattagtc aagtgttgta cgttttgtta
    1601  gggagac