Sequence of DPV Cardamom mosaic virus

Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA

ACC No: AJ312774

Dated: 2011-08-25 | Length: 1032 | CRC: -862145949

                
ID   AJ312774; SV 1; linear; genomic RNA; STD; VRL; 1032 BP.
XX
AC   AJ312774;
XX
DT   24-APR-2001 (Rel. 67, Created)
DT   25-AUG-2011 (Rel. 109, Last updated, Version 4)
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DE   Indian cardamom mosaic virus partial cp gene for coat protein, genomic RNA
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KW   coat protein; cp gene.
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OS   Indian cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus.
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RN   [1]
RP   1-1032
RA   Usha R.;
RT   ;
RL   Submitted (23-APR-2001) to the INSDC.
RL   Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL   Madurai, Tamil Nadu 625021, INDIA.
XX
RN   [2]
RX   DOI; 10.1023/A:1011191614839.
RX   PUBMED; 11556406.
RA   Jacob T., Usha R.;
RT   "3'-Terminal sequence analysis of the RNA genome of the Indian isolate of
RT   cardamom mosaic virus: a new member of genus Macluravirus of potyviridae";
RL   Virus Genes 23(1):81-88(2001).
XX
RN   [3]
RA   Jacob T., Jebasingh T., Venugopal M.N., Usha R.;
RT   "High genetic diversity in the coat protein and 3 untranslated regions
RT   among geographical isolates of Cardamom mosaic virus from south India";
RL   J. Biosci. 28(5):589-595(2003).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1032
FT                   /organism="Indian cardamom mosaic virus"
FT                   /host="cardamom"
FT                   /isolate="Kattappana"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Kerala"
FT                   /tissue_type="infected leaves"
FT                   /db_xref="taxon:152006"
FT   CDS             <1. .822
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /function="virus coat"
FT                   /db_xref="GOA:Q98VX1"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q98VX1"
FT                   /protein_id="CAC37402.1"
FT                   /translation="APLAPMTEQAGAGDQPRPTETVDNQFGDLPPGEGGDGDDADIQWR
FT                   IPPTPKTLNHFHNPRVKGRRIWNRRIINSIAKEQFTQSSQLATTLQFEKWAESVRKSLG
FT                   TPNEGDFQIYLTSWCLWCANNGTSSEVDVNQNMEIHSGGLFSTIPISIFVEPAVQNGGL
FT                   RKIMRHLSDVTSQILAKGGKMTAWGTKRGYTQLAMIPYAFDFCVQTNGMPKTVREQLNQ
FT                   GKAAAIGSGHQRVMLLDGKVQRSKTSYERHVDTDVDEFEHGSASESRATLY"
XX
SQ   Sequence 1032 BP; 310 A; 201 C; 238 G; 283 T; 0 other;

aj312774 Length: 1032  25-AUG-2011  Type: N  Check: 2513  ..

       1  gcaccgcttg caccaatgac agaacaagca ggagcgggtg accaaccacg
      51  gccaactgaa acagttgata accaatttgg tgatttgccc ccaggtgagg
     101  gtggggatgg agatgatgca gatattcaat ggagaattcc acctacacca
     151  aaaacgttga accattttca caacccacgc gtcaaaggta gacgaatctg
     201  gaatagaagg atcataaata gcatcgcaaa ggagcagttt acacaatcat
     251  ctcaactcgc cacaacactg caatttgaaa aatgggctga aagtgttagg
     301  aaaagtcttg gaactccaaa tgaaggtgat tttcaaattt atttaacatc
     351  gtggtgtctt tggtgtgcaa acaatgggac gtcttcagag gtcgatgtaa
     401  atcagaatat ggaaattcac tcaggtggct tgttctcaac aatcccaata
     451  tctatttttg ttgaaccagc agttcagaat ggggggctca ggaagatcat
     501  gcggcatctc agtgatgtaa cttcacaaat acttgcaaag gggggaaaaa
     551  tgacagcatg gggaaccaaa agaggttaca cgcaacttgc aatgattccc
     601  tatgcttttg atttttgtgt ccagacgaat ggaatgccga agacagttcg
     651  cgaacagcta aaccaaggaa aagcagcagc aattggatct ggacaccaac
     701  gcgtcatgct gcttgatggg aaggtgcagc gtagcaaaac aagttatgaa
     751  agacacgtcg acactgatgt tgacgaattt gaacatggat ctgcttccga
     801  atcacgcgca acattgtatt agtcataatt ttatgctatt actttgtgtt
     851  tttactttta agttgttttg tatttctttt tcttcatgct gtttttgcat
     901  ttacaagttc aatgggagtt tttgtgggtt ttctctcaac gcttggcaac
     951  cctcagtgca gtaattaagg ttgctctgga cgagcacctg gcaacatatg
    1001  atgttgttta tcctattacc gtagaaggtt at