Sequence of DPV Cardamom mosaic virus
Cardamom mosaic virus partial nib gene for nuclear inclusion body b, genomic RNA
ACC No: AJ345002
Dated: 2011-08-25 | Length: 1746 | CRC: -1864987556
ID AJ345002; SV 1; linear; genomic RNA; STD; VRL; 1746 BP.
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AC AJ345002;
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DT 09-AUG-2001 (Rel. 68, Created)
DT 25-AUG-2011 (Rel. 109, Last updated, Version 4)
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DE Cardamom mosaic virus partial nib gene for nuclear inclusion body b,
DE genomic RNA
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KW NIb gene; nuclear inclusion body b.
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OS Cardamom mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Macluravirus.
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RN [1]
RP 1-1746
RA Usha R.;
RT ;
RL Submitted (08-AUG-2001) to the INSDC.
RL Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL Madurai, Tamil Nadu 625021, INDIA.
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RN [4]
RX DOI; 10.1023/A:1011191614839.
RX PUBMED; 11556406.
RA Jacob T., Usha R.;
RT "3'-Terminal sequence analysis of the RNA genome of the Indian isolate of
RT cardamom mosaic virus: a new member of genus Macluravirus of potyviridae";
RL Virus Genes 23(1):81-88(2001).
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RN [5]
RA Jebasingh T., Jacob T., Shah M., Das D., Krishnaswamy S., Usha R.;
RT "Optimized expression, solubilization and purification of nuclear inclusion
RT protein b of cardamom mosaic virus";
RL Indian J. Biochem. Biophys. 45(2):98-105(2008).
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FH Key Location/Qualifiers
FH
FT source 1. .1746
FT /organism="Cardamom mosaic virus"
FT /host="cardamom"
FT /isolate="Yeslur"
FT /mol_type="genomic RNA"
FT /country="India:Karnataka"
FT /tissue_type="infected cardamom leaves"
FT /db_xref="taxon:104637"
FT CDS <1. .>1746
FT /codon_start=1
FT /gene="nib"
FT /product="nuclear inclusion body b"
FT /function="RNA dependent RNA polymerase"
FT /note="NIb is a protein cleaved from the polyprotein. The
FT sequence given here is based on the potyviral cleavage
FT sites."
FT /db_xref="GOA:Q911I2"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q911I2"
FT /protein_id="CAC50818.1"
FT /translation="GLQMFEVENLKVPTDTSMYTIENLHSRSTSRRFRLSVAEAVCSAI
FT PSGWSLSSAYEERSVCKCIFEQRHTYVGESPYWREFKRIHSDHVRGISSYEDFYAPSAL
FT TFDAYWKDLLKFNRISAGEPKWDEKALQCSMIATIRALESAGMVCTKIRTVHEVLSDVQ
FT WSTAAGPLYAMKKKELCKNLSVEELDTLAIHVKTRLIKGDNCGVWNGAMKAELRPIEKV
FT QANKTRVFTAAPLTTLIASKFFVDDFNKQFYTTHLKAPHTVGINKFARGWEKLYEYLHV
FT DGWLHGSGDGSRFDSSIDDFWFDKLYTIRAHFFCKSDKDVAKQALGNMYREFLYTPIHT
FT TSGNILVKQVGNNSGQPSTVVDNTLILMMSFYYAYIMKTQDFDCEHIHKRMKFVCNGDD
FT NKFSLAPSFVKEFGGEFTTEIKQLGLTYEFDDLTDDITENPYMSLTMVRTSSGIGFSLH
FT PSRIIAIVQWIKKGDIIQATQAAFAAMIEAYNDPWLFSILHLYLVWLLIEYKDALNFAR
FT VNGIFGVVYFDPCQVHALHYGTPTVNEFEECESESCIDDDDFEAIEYCSQQFQMDLVGT
FT PTAPRQ"
FT mat_peptide <1. .>1746
FT /gene="nib"
FT /product="NIb"
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SQ Sequence 1746 BP; 537 A; 331 C; 401 G; 477 T; 0 other;
aj345002 Length: 1746 25-AUG-2011 Type: N Check: 806 ..
1 gggttgcaaa tgtttgaagt tgaaaatctt aaagttccca cagacacgag
51 tatgtacact attgaaaatc ttcattcaag aagcacgagc aggaggtttc
101 gtttgagtgt cgctgaggct gtgtgctccg caatcccttc cggttggagt
151 ctcagctcag catatgaaga acgtagcgtt tgcaaatgca tttttgaaca
201 acgacacacg tatgttgggg aatcaccata ctggcgagag tttaaaagaa
251 ttcatagcga tcatgtgcgt gggatttcct catatgagga cttctacgca
301 ccaagtgcgt taactttcga tgcctactgg aaggatttac taaagttcaa
351 tcgtattagt gcaggcgaac ctaagtggga tgaaaaagca ctacaatgct
401 ccatgattgc aacaatacgc gcacttgaaa gcgcaggaat ggtttgcacg
451 aagattagga cagtccatga ggttttatca gatgtgcagt ggtcaacggc
501 agctggaccc ctttatgcta tgaagaaaaa ggaactgtgc aaaaaccttt
551 cagttgaaga gttggatact ttagcaatac atgtcaaaac aagattgatc
601 aaaggggaca attgtggggt ttggaatggt gctatgaaag ctgaattacg
651 tccaattgaa aaagtgcaag ccaataagac gcgagttttc acagcagctc
701 ctttaacaac attaatagct tcaaagttct ttgtcgatga cttcaacaaa
751 cagttctaca caacacacct caaagctcca catactgttg ggataaacaa
801 attcgcacgc ggatgggaaa agttatacga gtacttacat gtagatggct
851 ggttgcatgg gagcggggat ggatcaagat tcgattcttc gattgatgac
901 ttttggtttg ataagcttta cacgattagg gcacatttct tctgcaaaag
951 tgataaggat gttgcaaaac aagctctcgg aaacatgtac agagaattct
1001 tatacacacc aattcacaca acttccggaa atatcctagt caagcaggtg
1051 ggcaacaaca gtggacaacc aagtacagta gtcgacaaca ccttaatttt
1101 aatgatgtcc ttttattacg cttacatcat gaagacacaa gatttcgatt
1151 gtgagcacat acataaacgg atgaaattcg tctgtaatgg ggacgataac
1201 aaattctcac tggccccaag cttcgtcaag gagtttgggg gagagttcac
1251 aactgagatt aagcaacttg gtttgacgta tgaattcgat gatctcaccg
1301 acgatataac ggagaatcca tacatgagtt taacaatggt gcggacgtcg
1351 agtggcattg gtttttctct gcatccatct agaatcattg caattgttca
1401 gtggatcaaa aagggagata ttattcaagc aacgcaagca gcatttgcag
1451 caatgattga ggcatacaat gacccatggc tctttagtat cttgcatctc
1501 tacctggtat ggttgctcat tgagtataaa gatgctttga actttgcgag
1551 ggtcaatggt atttttggag tcgtttactt tgatccatgt caagttcatg
1601 cactacacta tggtactcca acagtcaatg aatttgagga atgtgagagc
1651 gagagttgca ttgatgacga tgattttgag gctatcgaat attgttctca
1701 gcagtttcaa atggatttag taggcacgcc aacagcacca agacaa