Sequence of DPV Potato virus Y

Potato virus Y partial genomic RNA for polyprotein gene, isolate PVY-N

ACC No: AJ390288

Dated: 2000-08-29 | Length: 1203 | CRC: 703313292

                !!NA_SEQUENCE 1.0
ID   PVI390288  standard; RNA; VRL; 1203 BP.
XX
AC   AJ390288;
XX
SV   AJ390288.1
XX
DT   29-AUG-2000 (Rel. 64, Created)
DT   29-AUG-2000 (Rel. 64, Last updated, Version 1)
XX
DE   Potato virus Y partial genomic RNA for polyprotein gene, isolate PVY-N
XX
KW   coat protein; cp gene; NIb gene; NIb replicase; polyprotein.
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1203
RA   Boonham N.;
RT   ;
RL   Submitted (01-NOV-1999) to the EMBL/GenBank/DDBJ databases.
RL   Boonham N., Plant Health, CSL, Sand Hutton, YO41 1LZ, UNITED KINGDOM.
XX
RN   [2]
RA   Boonham N., Walsh K., Hims M., North J., Barker I.;
RT   "Sequence comparisons within the PVY coat protein highlight a distinct
RT   group of recombinant isolates (PVYNTN) associated with potato tuber
RT   necrotic ringspot disease (PTNRD).";
RL   Unpublished.
XX
DR   SPTREMBL; Q9EAD5; Q9EAD5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1203
FT                   /country="United Kingdom"
FT                   /db_xref="taxon:12216"
FT                   /virion
FT                   /organism="Potato virus Y"
FT                   /strain="NTN"
FT                   /isolate="PVY-N"
FT   CDS             <1. .875
FT                   /codon_start=3
FT                   /db_xref="SPTREMBL:Q9EAD5"
FT                   /product="polyprotein"
FT                   /protein_id="CAC05600.1"
FT                   /translation="AFTEMMVALDDELECDTYEVHHQGNDTIDAGGSTKKDAKQEQGSI
FT                   QPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLVHLLEYAPQQIDIS
FT                   NTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQ
FT                   VEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYA
FT                   FDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSM
FT                   HTLLGVKNM"
FT   mat_peptide     <1. .71
FT                   /gene="NIb"
FT                   /product="NIb replicase"
FT   mat_peptide     72. .875
FT                   /gene="CP"
FT                   /product="coat protein"
FT   3'UTR           876. .>1203
XX
SQ   Sequence 1203 BP; 376 A; 223 C; 284 G; 320 T; 0 other;

AJ390288  Length: 1203  December 21, 2001 15:41  Type: N  Check: 5630  ..

       1  tagctttcac tgaaatgatg gttgccttgg atgatgaact tgagtgcgat
      51  acttatgaag tgcaccatca aggaaatgac acaatcgatg caggaggaag
     101  cactaagaag gatgcaaaac aagagcaagg tagcattcaa ccaaatctca
     151  acaaggaaaa ggagaaggac gtgaatgttg gaacatctgg aactcatact
     201  gtgccacgaa ttaaagctat cacgtccaaa atgagaatgc ccaagagtaa
     251  aggtgcaact gtactaaatt tggtacactt actcgagtat gctccacagc
     301  aaattgacat ctcaaatact cgagcaactc aatcacagtt tgatacgtgg
     351  tatgaagcgg tacaacttgc atacgacata ggagaaactg aaatgccaac
     401  tgtgatgaat gggcttatgg tttggtgcat tgaaaatgga acctcgccaa
     451  acatcaacgg agtttgggtt atgatggatg gagatgaaca agtcgaatac
     501  ccactgaaac caatcgttga gaatgcaaaa ccaacactta ggcaaatcat
     551  ggcacatttc tcagatgttg cagaagcgta tatagaaatg cgcaacaaaa
     601  aggaaccata tatgccacga tatggtttag ttcgtaatct gcgcgacgga
     651  agtttggctc gctatgcttt tgacttttat gaggtcacat cacgaacacc
     701  agtgagggct agggaagcgc acattcaaat gaaggccgca gcattgaaat
     751  cagcccaatc tcgacttttc gggttggacg gtggcatcag tacacaagag
     801  gagaacacag agaggcacac caccgaggat gtctctccaa gtatgcatac
     851  tctacttgga gtcaagaaca tgtgatgtag tgtctctccg gacgatatat
     901  aagtatttac atatgcagta agtattttgg cttttcctgt actactttta
     951  tcataattaa taatcagttt gaatattact aatagataga ggtggcaggg
    1001  tgatttcgtc atcgtggtga ctctatcttt taattccgca ttattaagtc
    1051  ttagataaaa gtgccgggtt gtcgttgttg tggatgattc atcgattagg
    1101  tgatgttgcg attctgtcgt agcagtgact atgtctggat ctatctgctt
    1151  gggtggtgtt gtgatttcgt cataacagtg actgtaaact tcaatcagga
    1201  gac