Sequence of DPV Potato virus Y

Potato virus Y partial genomic RNA for polyprotein gene, isolate S-NTN

ACC No: AJ390295

Dated: 2000-08-29 | Length: 1201 | CRC: 328918057

                !!NA_SEQUENCE 1.0
ID   PVI390295  standard; RNA; VRL; 1201 BP.
XX
AC   AJ390295;
XX
SV   AJ390295.1
XX
DT   29-AUG-2000 (Rel. 64, Created)
DT   29-AUG-2000 (Rel. 64, Last updated, Version 1)
XX
DE   Potato virus Y partial genomic RNA for polyprotein gene, isolate S-NTN
XX
KW   coat protein; cp gene; NIb gene; NIb replicasel; polyprotein.
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1201
RA   Boonham N.;
RT   ;
RL   Submitted (01-NOV-1999) to the EMBL/GenBank/DDBJ databases.
RL   Boonham N., Plant Health, CSL, Sand Hutton, YO41 1LZ, UNITED KINGDOM.
XX
RN   [2]
RA   Boonham N., Walsh K., Hims M., North J., Barker I.;
RT   "Sequence comparisons within the PVY coat protein highlight a distinct
RT   group of recombinant isolates (PVYNTN) associated with potato tuber
RT   necrotic ringspot disease (PTNRD).";
RL   Unpublished.
XX
DR   SPTREMBL; Q9EAC8; Q9EAC8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1201
FT                   /country="United Kingdom"
FT                   /db_xref="taxon:12216"
FT                   /virion
FT                   /organism="Potato virus Y"
FT                   /strain="N"
FT                   /isolate="S-NTN"
FT   CDS             <1. .875
FT                   /codon_start=3
FT                   /db_xref="SPTREMBL:Q9EAC8"
FT                   /product="polyprotein"
FT                   /protein_id="CAC05607.1"
FT                   /translation="AFTEMMVALDDEFECDTYEVHHQGNDTIDAGGSTKKDAKQEQGSI
FT                   QPNPNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDIS
FT                   NTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQ
FT                   VEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYA
FT                   FDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSM
FT                   HTLLGVKNM"
FT   mat_peptide     <1. .71
FT                   /gene="NIb"
FT                   /product="NIb replicase"
FT   mat_peptide     72. .875
FT                   /gene="CP"
FT                   /product="coat protein"
FT   3'UTR           876. .>1201
XX
SQ   Sequence 1201 BP; 371 A; 213 C; 286 G; 331 T; 0 other;

AJ390295  Length: 1201  December 21, 2001 15:41  Type: N  Check: 9355  ..

       1  tggccttcac tgaaatgatg gttgccttgg atgatgaatt tgagtgcgat
      51  acttatgaag tgcaccatca aggaaatgac acaatcgatg caggaggaag
     101  cactaagaaa gatgcaaaac aagagcaagg tagcattcag ccaaatccca
     151  acaaggaaaa ggaaaaggac gtgaatgttg gaacatctgg aactcacact
     201  gtgccacgaa ttaaagctat cacgtccaaa atgagaatgc ccaagagtaa
     251  gggtgcaact gtactaaatt tggaacactt actcgagtat gctccacagc
     301  aaattgacat ctcaaatact cgagcaactc aatcacagtt tgatacatgg
     351  tatgaagcag tacaacttgc atacgacata ggagaaactg aaatgccaac
     401  tgtgatgaat gggcttatgg tttggtgcat tgaaaatgga acctcgccaa
     451  atatcaatgg agtttgggtt atgatggatg gagatgaaca agtcgaatac
     501  ccactgaaac caatcgttga gaatgcaaaa ccaacactta ggcaaatcat
     551  ggcacatttc tcagatgttg cagaagcgta tatagaaatg cgcaacaaaa
     601  aggaaccata tatgccacga tatggtttag ttcgtaatct gcgcgatgga
     651  agtttggctc gctatgcttt tgacttttat gaagttacat cacggacacc
     701  agtgagggct agagaggcac acattcaaat gaaggccgca gctttaaaat
     751  cagctcaatc tcgacttttc ggattggatg gtggcattag tacacaagag
     801  gaaaacacag agaggcacac caccgaggat gtttctccaa gtatgcatac
     851  tctacttgga gtgaagaaca tgtgattgta gtgtctttcc ggacgatata
     901  tagatattta tgtttgcagt aagtattttg gcttttcctg tactactttt
     951  atcgtaatta ataatcgttt gaatattact ggcagatagg ggtggtatag
    1001  cgattccgtc gttgcagtga ccttagctgt cgtttctgta ttattatgtt
    1051  tgtataaaag tgccgggttg ttgttgttgt ggctgatcta tcgattaggt
    1101  gatgttgcga ttcgtcgtaa cagtgactat gtctggattt agttacttgg
    1151  gtgatgctgt gattctgtca tagcagtggc tgtaaacttc aatcaggaga
    1201  c