Sequence of DPV Potato virus Y

Potato virus Y partial genomic RNA for polyprotein gene, isolate O-Tom

ACC No: AJ390307

Dated: 2000-08-29 | Length: 1204 | CRC: 1423568922

                !!NA_SEQUENCE 1.0
ID   PVI390307  standard; RNA; VRL; 1204 BP.
XX
AC   AJ390307;
XX
SV   AJ390307.1
XX
DT   29-AUG-2000 (Rel. 64, Created)
DT   29-AUG-2000 (Rel. 64, Last updated, Version 1)
XX
DE   Potato virus Y partial genomic RNA for polyprotein gene, isolate O-Tom
XX
KW   coat protein; cp gene; NIb gene; NIb replicase; polyprotein.
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1204
RA   Boonham N.;
RT   ;
RL   Submitted (01-NOV-1999) to the EMBL/GenBank/DDBJ databases.
RL   Boonham N., Plant Health, CSL, Sand Hutton, YO41 1LZ, UNITED KINGDOM.
XX
RN   [2]
RA   Boonham N., Walsh K., Hims M., North J., Barker I.;
RT   "Sequence comparisons within the PVY coat protein highlight a distinct
RT   group of recombinant isolates (PVYNTN) associated with potato tuber
RT   necrotic ringspot disease (PTNRD).";
RL   Unpublished.
XX
DR   SPTREMBL; Q9EAB6; Q9EAB6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1204
FT                   /country="Portugal"
FT                   /db_xref="taxon:12216"
FT                   /virion
FT                   /organism="Potato virus Y"
FT                   /strain="C"
FT                   /isolate="O-Tom"
FT   CDS             <1. .875
FT                   /codon_start=3
FT                   /db_xref="SPTREMBL:Q9EAB6"
FT                   /product="polyprotein"
FT                   /protein_id="CAC05619.1"
FT                   /translation="AFTEMMVALDDEFECDSYEVHHQANETIDAGENSKKDAKPEQGSI
FT                   QRNPNKGKDKDVNAGTSGTHTVPRIKAITSKMRMPKSKGTAVLNLEHLLEYAPQQIDIS
FT                   NTRATQSQFDTWYEAVRVAYDIGENEMPTVMNGLMVWCIENGTSPNVNGVWVMMDGNEQ
FT                   VEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLIRNLRDGSLARYA
FT                   FDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGVSTQEENTERHTTEDVSPSM
FT                   HTLLGVKNM"
FT   mat_peptide     <1. .71
FT                   /gene="NIb"
FT                   /product="NIb replicase"
FT   mat_peptide     72. .875
FT                   /gene="CP"
FT                   /product="coat protein"
FT   3'UTR           876. .>1204
XX
SQ   Sequence 1204 BP; 373 A; 214 C; 295 G; 321 T; 1 other;

AJ390307  Length: 1204  December 21, 2001 15:41  Type: N  Check: 1623  ..

       1  aggctttcac tgaaatgatg gttgcattgg atgatgagtt tgaatgtgat
      51  tcttatgaag tacatcacca ggcaaatgaa acaattgatg ctggagaaaa
     101  cagcaagaaa gatgcgaaac cagaacaagg tagtatccag cggaacccca
     151  acaaaggaaa ggataaggac gtgaatgccg gtacatctgg aactcatact
     201  gtaccaagaa taaaggctat cacgtcaaag atgagaatgc ctaaaagcaa
     251  aggaacggcc gtgctcaact tagaacactt gctcgagtat gctccacaac
     301  aaatagacat ctcaaatact cgggcaactc aatcacagtt tgatacgtgg
     351  tatgaagcag tgcgggtggc atacgacata ggggaaaatg aaatgccaac
     401  tgtgatgaac gggcttatgg tttggtgcat tgaaaatgga acctcgccta
     451  atgtcaacgg agtttgggtt atgatggatg gaaatgaaca agttgaatat
     501  ccgttgaaac caatcgttga gaatgcaaaa ccgaccctta ggcaaatcat
     551  ggcacatttc tcagatgttg cagaagcgta tatagaaatg cgcaacaaaa
     601  aggaaccata tatgccacga tatggtttaa ttcgaaatct gcgggatgga
     651  agtctagcgc gttatgcctt tgacttttat gaagtcacat cacgaacacc
     701  agtgagggct agggaagcgc acattcaaat gaaggccgca gcattaaaat
     751  cagctcaatc tcgacttttc gggttggacg gtggcgttag tacacaagag
     801  gagaacacag agaggcacac caccgaggat gtttctccaa gtatgcatac
     851  tttacttgga gtcaagaaca tgtgattgtg atgtctctcc ggacgatata
     901  taagtattta catatgcagt aagtattttg gcctttcctg tactactttt
     951  attgtaacta gtaatcagtt tggatattag taatagatag aggtggcagg
    1001  gtgatttcgt cattgcggtg actctatctg ttatttctgc attattaagt
    1051  ttcaaataag agtgccgggt tgtcgttgtt gtaggtaaac catcgattag
    1101  gtgaygttgc gattttgtcg ttgcagtgac tatgtctggt tctatctact
    1151  tgggtggtgt tgtgatttcg tcataacagt gactgtaaac ttcaatcagg
    1201  agac