Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus gene for P2 protein (ORF2), genomic RNA
ACC No: AJ409145
Dated: 2001-12-14 | Length: 3812 | CRC: -378530844
!!NA_SEQUENCE 1.0
ID RBL409145 standard; RNA; VRL; 3812 BP.
XX
AC AJ409145;
XX
SV AJ409145.1
XX
DT 14-DEC-2001 (Rel. 70, Created)
DT 14-DEC-2001 (Rel. 70, Last updated, Version 1)
XX
DE Rice black streaked dwarf virus gene for P2 protein (ORF2), genomic RNA
XX
KW ORF2; P2 protein.
XX
OS Rice black streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Fijivirus; Fijivirus group 2.
XX
RN [1]
RP 1-3812
RA Adams M.J.;
RT ;
RL Submitted (08-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL AL5 2JQ, UNITED KINGDOM.
XX
RN [2]
RA Zhang H., Chen J., Adams M.J.;
RT "Molecular characterisation of segments 1 to 6 of Rice black-streaked dwarf
RT virus from China provides the complete genome";
RL Arch. Virol. 146:2331-2339(2001).
XX
DR SPTREMBL; Q8UZ06; Q8UZ06.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3812
FT /chromosome="S2"
FT /country="China:Zhejiang"
FT /db_xref="taxon:10990"
FT /virion
FT /organism="Rice black streaked dwarf virus"
FT /specific_host="Oryza sativa"
FT 5'UTR 1. .45
FT CDS 46. .3726
FT /db_xref="SPTREMBL:Q8UZ06"
FT /note="ORF2"
FT /product="P2 protein"
FT /function="possible core protein"
FT /protein_id="CAC84073.1"
FT /translation="MNSEEKRKKNANQNEDENKEPDKEERQEESKDEKKKNQSETEQTS
FT SPDPKLINDQEGITNDSRPEEITYQSGNTIQAKTALTVEAIMNIQGHLKQSDQKLVDEQ
FT TSQYLTYLTSNVPAYTTTFGITDCSDFQLVPFYRTIDYTEDTSQQFPSLFCFNTFVNQY
FT YDTDMTTFESKRYFEIFKDHPALLRSSETFPVNAYKVSVGWNGNSFAPEITDPTMIGDV
FT SLIKNVSYVGVHSSDNYKDRKMFSRLKTFLEIAANCNLVLKGCRTKPLSIEYDNTRISK
FT KLAGKKILYNDRAHIIFNGIYHAVTPFMNKINDMLMDGNTEIDFEKIYKFGRDVEKRIN
FT TYDMICRGYGNMDQFSSYLINLATQRICDNRMTANHYKTLMAANYPNRVSMHVFDTMID
FT DLLFVYCPTEEDWKFCMFVIMIDKNIRSLIMNKSLSLMTSRNLFGQNDIGVKLTTLINN
FT KNNSPTSREAVTYFMNVLAGGNVESFCQLLTAEMYARFIDFKVENTYVETEYLDILVLF
FT EVLFAFLITPRLAWWNSHRFGRTLFNLMYTFCNDEWNKWEGEFGVFVKLQRGAWNKVNI
FT SIDHYDLNDLLDGVVFSFLVQRQYTQKQLSDYPFISSIYTLIAPLGEYVNLTRKINAKY
FT PFFETVVRGYLPCSAEDYKAASMINDVNTRVNAIGAAVHTVTKNYFSHNTVKTSVKESY
FT NTLLNTIRIASNNLGLLMHYTVAPMLKTMYDSFLFVCDGFDKASPWKRPRMISYSGYNV
FT LQDTGNQNADLINLLKGKGITVPLTPLHCFSKLYTYIAIGVHGVCRNDTVTTTGSFLSR
FT NFYDPNTINILPFDGQEITDLALKIVGHSKRINTVFSIFNYLHKESESDILATVRERLA
FT AFWTTSNGRAVLNEITKTFNCPVERYFEHENAFYTMDSDPRVYHPTLYTSDANGNIDPV
FT QPATCAVHKKYKYGDEYLENMLKVISHVMFDDELPLFRQVEGLAFGYYSSSTASPTDFF
FT NVENDTEYFTINLDETPGVFRTTGTDGFSVQLAFTKDNVNHEYINPLSNAIPKIKFILK
FT RLGNMNEHFVIFMKRMIDTKRHMVILTDVVVDYNIVTLSNWKDFKISEENVFDQFVLNR
FT DLNNIQLNFYDTRFIIQNRTDELLDRYIYLSYRNITALKDFVVMGGIFGNPNQAINKLT
FT DIDKDVYCFGEKNGQTSKYFISKRDKIKGSTVNFNNHFTYLGPKSETRLPILDIRVSSQ
FT L"
FT 3'UTR 3727. .3812
XX
SQ Sequence 3812 BP; 1282 A; 621 C; 673 G; 1236 T; 0 other;
AJ409145 Length: 3812 December 18, 2002 17:04 Type: N Check: 6305 ..
1 aagtttttta ccggacccta gaattcaccc aagatcaagg acgaaatgaa
51 ttctgaggag aaacgaaaaa agaacgctaa ccaaaacgaa gacgaaaata
101 aagaacccga caaagaagag cgacaagaag aatcgaaaga tgaaaagaag
151 aaaaatcaat ccgaaacaga acaaacgtca tcacccgacc ccaaacttat
201 aaacgaccaa gaaggtataa ctaatgactc aagacccgaa gaaattactt
251 atcagagtgg taacacaatt caagctaaaa cagcattaac tgttgaagcg
301 ataatgaata ttcaaggaca tctcaaacaa tcagaccaga aattagttga
351 tgaacaaacc agtcaatatc ttacttatct aacttcaaat gttcccgctt
401 acacaactac ttttggcatt actgattgtt cagactttca actggtacct
451 ttctatcgaa ccatcgacta tactgaagat acgtcacaac aattcccttc
501 attattttgt tttaatactt ttgttaatca atattatgat actgacatga
551 ccactttcga aagcaaaaga tattttgaaa tttttaaaga tcatcctgct
601 ttattaagat caagtgaaac atttcctgtt aatgcctata aagtcagtgt
651 tggatggaat ggaaatagct ttgctcctga gattacagac cccacaatga
701 tcggagatgt atctttaatt aaaaatgttt cttatgttgg tgttcacagt
751 tcagacaatt acaaagatcg aaaaatgttt tctcgattga agactttcct
801 tgaaatagct gctaattgta atttagtttt gaaaggttgt agaactaagc
851 ccttatccat agaatatgac aatactcgca tatccaaaaa attagctgga
901 aagaagattc tctataatga tcgagcacat ataatattca atggtattta
951 tcatgctgtt actcccttta tgaataaaat caatgatatg ctaatggatg
1001 gtaacacaga aattgatttt gagaagattt acaaatttgg acgtgacgtt
1051 gaaaaaagga ttaacactta cgatatgatc tgtcgcggct atggtaatat
1101 ggaccaattt tcatcttatt taattaatct cgcaacgcag agaatctgtg
1151 ataacagaat gacggccaac cattataaaa ccttgatggc tgcaaattat
1201 ccaaatagag ttagtatgca cgtttttgac accatgattg acgatttgtt
1251 atttgtgtat tgtccgaccg aagaagactg gaagttttgc atgtttgtaa
1301 ttatgataga taaaaacatt agatcattaa ttatgaataa gtctttgtca
1351 ttgatgactt cccgaaattt gtttggccaa aacgacattg gtgtgaaact
1401 tactacattg attaataata agaataatag tcctacatct cgagaagcag
1451 ttacttattt catgaatgtt ttagctggtg gtaatgttga aagtttttgt
1501 caattgttaa cagccgaaat gtacgccaga tttatagatt tcaaagttga
1551 aaacacttat gttgaaactg aatatttaga cattctagta ttatttgaag
1601 ttttatttgc ttttctaatt actcctcgtt tagcatggtg gaatagtcat
1651 agatttggtc gtacgttgtt taatcttatg tatacttttt gtaatgatga
1701 atggaacaaa tgggaaggag aatttggtgt ttttgttaag ttacaacgtg
1751 gagcatggaa caaagttaac atttcaatag accattacga tttaaacgat
1801 ttattagatg gagttgtttt tagcttttta gttcaaagac aatacactca
1851 aaaacaattg tcagattatc cgtttattag ctctatttat accctgattg
1901 ctcctttggg agaatacgta aacttaacta gaaaaattaa cgctaaatat
1951 cctttctttg aaactgtagt tcgtggatat ttgccttgtt cagcagaaga
2001 ttataaagca gcgagcatga tcaatgatgt aaatacaaga gttaatgcta
2051 taggagccgc tgttcatacg gtaaccaaga attattttag tcataacaca
2101 gtcaagacct cagtgaagga atcatataat actttgttga atacaattag
2151 aattgcttct aataatttgg gactcttgat gcattatact gtagcaccta
2201 tgttaaaaac gatgtatgat tcatttttat ttgtttgtga tgggtttgat
2251 aaagctagtc cttggaaaag acctcgtatg atttcctaca gtggatataa
2301 tgtgctacag gacacaggta atcaaaatgc tgatttgatc aatttgttga
2351 aagggaaagg cattactgtg cctctaactc cgcttcattg ttttagtaaa
2401 ctttacactt atattgctat tggagtacat ggcgtatgtc gaaatgatac
2451 cgtgactaca actggaagtt ttttgtctcg caatttttac gatcctaaca
2501 ctattaatat tttaccgttt gatggacaag aaatcactga tttagcattg
2551 aaaattgtag gtcatagtaa aaggattaat actgtatttt ccatatttaa
2601 ctatttacac aaagagagcg agagtgacat tttggcaact gtgagagaaa
2651 gacttgccgc tttctggaca actagcaatg gaagagccgt tctgaatgag
2701 atcaccaaaa ctttcaattg tcccgttgaa agatattttg aacatgaaaa
2751 tgctttctat actatggatt ctgatcctcg tgtctatcat cctactttat
2801 atacttctga cgctaatggt aacatcgacc cagttcaacc tgccacatgc
2851 gcagttcata agaaatataa gtatggtgat gagtacttag aaaacatgtt
2901 aaaagtaatt tctcacgtta tgtttgatga tgaactcccc ttattccgtc
2951 aagttgaggg attagccttt ggatattaca gttctagtac tgcttcacct
3001 actgattttt tcaatgttga gaatgatact gagtatttta ctattaatct
3051 agatgagact cctggtgttt ttagaactac aggaactgac ggattcagtg
3101 tacaattagc ttttacgaag gacaatgtga atcatgagta tattaatccc
3151 ttatcgaatg ctatccccaa aatcaaattc atactgaaga gattaggcaa
3201 tatgaatgaa cactttgtta tatttatgaa acgaatgatt gatactaaaa
3251 gacacatggt aattctgact gatgtagttg ttgattataa catcgtcacc
3301 ttgtctaatt ggaaagattt caaaatcagt gaagaaaatg tctttgatca
3351 gtttgtgtta aacagagatt tgaacaacat ccaactcaat ttttatgata
3401 ctcgtttcat catccagaac agaactgatg aactgttaga ccgttacatt
3451 tatttgagtt atcgtaacat tactgcctta aaagatttcg ttgtcatggg
3501 aggaatattc ggcaatccta atcaagctat taacaagttg actgatattg
3551 acaaggatgt ttattgtttt ggagagaaaa acggtcaaac ttcgaaatac
3601 ttcatcagta agagagataa aatcaaaggt agtacagtca acttcaataa
3651 tcattttact taccttggac ctaaatcgga aacgcgtctt ccaattctag
3701 atataagagt gtcatcgcag ttgtaaacac ttttctcctt aagattcgat
3751 gtgtctagcc tcttgcggtg ttttttgaag gtcatccaca accggtaaat
3801 tcagctattg tc