Sequence of DPV Leek yellow stripe virus

Leek yellow stripe potyvirus partial ORF1 for polyprotein, isolate yn2, genomic RNA

ACC No: AJ409306

Dated: 2002-02-05 | Length: 2082 | CRC: -1667037561

                !!NA_SEQUENCE 1.0
ID   LYE409306  standard; RNA; VRL; 2082 BP.
XX
AC   AJ409306;
XX
SV   AJ409306.1
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Leek yellow stripe potyvirus partial ORF1 for polyprotein, isolate yn2,
DE   genomic RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   leek yellow stripe potyvirus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-2082
RA   Adams M.J.;
RT   ;
RL   Submitted (20-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China";
RL   Arch. Virol. 147:419-428(2002).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2082
FT                   /country="China:Yunnan"
FT                   /db_xref="taxon:42004"
FT                   /virion
FT                   /organism="leek yellow stripe potyvirus"
FT                   /isolate="yn2"
FT                   /specific_host="Allium sativum"
FT   CDS             <1. .1488
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /product="hypothetical protein"
FT                   /protein_id="CAC84167.1"
FT                   /translation="GNNSGQPSTVVDNSLMVVFAMYYAMEMSNIEDIHSKCVFFVNGDD
FT                   LLIAVEPGSELFLDSLQNLFQQLGLNYNFDSRTRNKEELCFMSHMGILQDGIYIPKLDK
FT                   ERIVSILEWDRAQQPEHRLEAICAAMIEAWGYPDLLDRIRKFYCWVLEQAPYSELSAVG
FT                   KAPFISEMALRNLYTDYKATESELARYLDLYANDTITEDIFEYQAGEELDAGTQANKSS
FT                   RGYADKSIEQRNPTPTQASTSGRKDGDSSDLSSSKDRDVNVGTTGTFSVPRIKQITQKG
FT                   LLIPMDGGKSVLNLDHLLQYKPSQLCISNTRATRAQFNTWRSKLQDEYGVSESEMSIIL
FT                   NGLVVWCIENGTSPNINGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMTHFSALAEAYI
FT                   EMRNSEQAYMPRYGLQRNLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRP
FT                   RLFGLDGNVTTMDEDTERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     <1. .621
FT                   /product="NIb protein"
FT   mat_peptide     622. .1485
FT                   /product="coat protein"
FT   3'UTR           1489. .2082
XX
SQ   Sequence 2082 BP; 645 A; 403 C; 488 G; 546 T; 0 other;

AJ409306  Length: 2082  February 12, 2002 17:24  Type: N  Check: 7874  ..

       1  ggaaataaca gcggacagcc atccaccgtg gtagataact cacttatggt
      51  cgtgtttgcc atgtactacg ctatggaaat gagcaatatc gaggacattc
     101  acagtaagtg tgttttcttt gtgaatggcg atgatctact aattgcagtt
     151  gaaccaggct ctgagctctt ccttgatagt ttgcaaaact tatttcagca
     201  actcggtcta aattataatt ttgatagtcg aacgcgcaat aaagaggagt
     251  tgtgcttcat gtcacacatg gggattctac aagatggtat ctacatacca
     301  aagctagata aagagcggat agtgtcaata ttagaatggg atcgagctca
     351  acaacccgag cacaggttgg aagccatctg cgcagctatg attgaagcgt
     401  ggggttaccc agatcttcta gaccgaattc gaaaattcta ttgttgggtt
     451  cttgaacaag cgccgtatag tgagttaagt gccgttggaa aggcaccatt
     501  catctctgag atggccttgc gtaacttgta tactgactat aaggctacag
     551  agagtgaatt agcaaggtac cttgatctgt atgcgaatga tacaattaca
     601  gaagacattt ttgagtacca ggcaggtgaa gaactagatg caggtacaca
     651  agctaacaag agctcaaggg gttacgcaga taagtctata gagcaacgaa
     701  atccaacacc aacccaagct agcacaagtg ggaggaaaga cggtgatagt
     751  tcagatttaa gctcaagtaa agatagagat gtaaatgtag gcaccacagg
     801  gactttcagt gtgccaagaa taaaacaaat cacacaaaaa ggtttattaa
     851  ttccaatgga tggaggtaaa tcagtgctta atctggatca ccttctacaa
     901  tacaagccta gtcaactatg tatatcaaac actagagcca ctagagcaca
     951  attcaatact tggagatcta aactacagga tgaatatggg gtttcagaaa
    1001  gtgaaatgag cattattttg aacggtttgg tggtgtggtg tattgaaaat
    1051  ggcacatcac caaacataaa tggagtctgg acaatgatgg atggtgagga
    1101  gcaagttgag ttccctttac ggccagtcgt cgaacacgca cagccaactc
    1151  tacgacaaat aatgacacat ttttcagcgc ttgcagaagc ctatattgag
    1201  atgagaaatt cggaacaggc atacatgcca agatacggat tgcagagaaa
    1251  tctaacagat atgagtctcg cacggtatgc atttgacttc tatgaagtta
    1301  catcaagaac accagttaga gcgcgcgagg ctcacgcaca gatgaaagca
    1351  gcagccttgc ggaattcaag gccaaggctg ttcggactag acggtaacgt
    1401  cacaactatg gatgaggaca cggagaggca cacagcacat gacgtgaatg
    1451  cacggatgca ccatctcgat ggtgcgcata tgcagtgatg tttcggttta
    1501  taaccggtta tggacttcca tttaaaaagt ctcgagtgcc agacttgtat
    1551  tttggctagt ctagtgaaac tataattcac tcgttcaagg cagtttctac
    1601  tttaaggatg acttgagaat taatagctct caatgccggc cacgttggtg
    1651  gttaccaaga tccaacactt ggtttgaagt tgatcgtctg aagatctatc
    1701  ccgagtacgg ttaattaaag aaggtgaatt cgattgttaa ggatggtaag
    1751  tctgaagcct ttgtggtgta taagcagcct gaatttcgat accccacctt
    1801  taccctacaa cggagtgcta ctttagagac tagctaggat tgagaccgaa
    1851  ttctcacgtg ctggcatggc cagcggctga tcacctaatg attagttgac
    1901  cactttacag tcaatatgga aacccgtagt atcctatcct tacctaatat
    1951  cgtaagtttt atttactggt gtagcgtggt acaaccacct tataaacact
    2001  ttgaatatta ggatcgagct gttcatctga agacactaag agtggttaac
    2051  catgtgtgtg ttcttatgtt gcagtaagag ac