Sequence of DPV Dobrava-Belgrade virus
Dobrava virus complete L segment gene for polymerase protein, strain DOBV/Ano-Poroia/Afl9/1999)
ACC No: AJ410617
Dated: 2003-04-04 | Length: 6532 | CRC: 1513168665
!!NA_SEQUENCE 1.0
ID DVI410617 standard; RNA; VRL; 6532 BP.
XX
AC AJ410617;
XX
SV AJ410617.1
XX
DT 27-MAR-2003 (Rel. 75, Created)
DT 04-APR-2003 (Rel. 75, Last updated, Version 2)
XX
DE Dobrava virus complete L segment gene for polymerase protein, strain
DE DOBV/Ano-Poroia/Afl9/1999)
XX
KW L segment gene; polymerase protein.
XX
OS Dobrava virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus.
XX
RN [1]
RP 1-6532
RA Nemirov K.;
RT ;
RL Submitted (08-MAY-2001) to the EMBL/GenBank/DDBJ databases.
RL Nemirov K., Department of Virology, University of Helsinki, Haartman
RL institute, Haartmaninkatu 3, P.O. Box 21, FIN-00014, FINLAND.
XX
RN [2]
RA Nemirov K., Vapalahti O., Papa A., Plyusnina A., Lundkvist A.,
RA Antoniadis A., Plyusnin A.;
RT "Genetic characterization of new Dobrava hantavirus isolate from Greece";
RL J. Med. Virol. 69:408-416(2003).
XX
RN [3]
RA Nemirov K., Hentonnen H., Vaheri A., Plyusnin A.;
RT "Phylogenetic evidence for host switching in the evolution of hantaviruses
RT carried by Apodemus mice";
RL Virus Res. 90:207-215(2002).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6532
FT /country="Greece:Ano-Poroia"
FT /db_xref="taxon:12506"
FT /virion
FT /organism="Dobrava virus"
FT /strain="DOBV/Ano-Poroia/Afl9/1999"
FT /specific_host="Apodemus flavicollis"
FT CDS 38. .6493
FT /gene="L segment"
FT /product="polymerase protein"
FT /protein_id="CAC85167.1"
FT /translation="MEKYREIHRDLQSFPVGSLTAVECIDYLDRLYAIRHDIVDQMIKH
FT DWSDNKDSEESIGKVLLFAGVPNNVITAMEKKIIPDHPSGKTLRSFFKMTPDNYKITGS
FT TIEFVEVTVTVDVDKGIREKRLKYEAGLKYIEQELHNHFLRGDIPQPYKITFQVVSVRT
FT DGSNISTQWPSRRNDGVVQYMRLVQAEISYVREHLIRQEERAALEAMFNLKFNISNIKN
FT QPYYIPDYRGIPLIHPNINDLVVYMRDWLSKSHKFSFHEGKVPAVFDCFNENELEHAVK
FT YPISRHPRNFLLIQCSLLSSYNPATILSDQVDSRRACNSVLNLIPETPTSFLIHDMAYR
FT YINLTREDMVSFYAPKTQFIPTQNVKEPGTFKLTANSMRPESKAMLDMLGSHEPGEKKG
FT ALIESLNLSSHIVQSECVSLITKILSDLELNISEPTSHGSFTTKHTYVDNVLEKFFQNE
FT IQRYLLDVLKKTTAWHIGHLIRDITESLIAHSGLKRSKYWSVHAYNNGNVILFILPSKS
FT LEVAGSYIRFVTVFRMGPGLVDKDNLDTILTDQDVTWGVSKVMSIDLNRLLALNIAFEK
FT ALIATATWFQYYTEDQGQFPLQHAIRSVFAYHLLLAVCQKMKLCAIFDNLRYLIPAVTS
FT LYSGFPSLINKLFERPFKSALEVYVYYNIKSLLVALAQNNKARFYSKVKLLGLTVDQST
FT VGASGIYPSFMSRVIYKHYRSLISEVTTCFFLFEKGLHGNMNEEAKIHLETVEWALKFR
FT QKEDQYGESMVENGYTIGELNDNQDLVEQQLYCQDAVELAAVELNKILSTKSQVVANSI
FT LNKYWEVPYFSQTRNISLKGMSGQVQEDGHLAASVTIIEAIRYLSSSQNNPSVLQLYEE
FT TRKVKAQARIVRKYQRTEADRGFFITTLPTRCRLEIIEDYYDAISKNVAEEYISYGGER
FT KILCIQSALEKALRWASGESFIELSNGKFIRMKRKLMYVSADATKWSPGDNSAKFRRFT
FT AALHNGLPDDRLKNCVIDALRNVYKTDFYMSRKLRAYIDNMNGHEPAVKNFLEFFPDGH
FT CGEVRGNWLQGNLNKCSSLFGVGMSLLFKQLWNELFPELDCFFEFAHHSDDALFIYGYL
FT EPIDDGTDWFLYVSQQIQAGHLHWFSVNTEMWKSMFNLHEHVLLLGSIKISPKKTTLSP
FT TNAEFLSTFFESCAVSIPFIKILLGSLSDLPGLGYFDDLAAAQSRCVKAMDLGASPQVA
FT QLAVALCTNKVERLYGTAVGMIKHPSTYLQVKHGDTPIPLGGSGAMSIMELATAGIGMS
FT DKNLLKRALLGYIHKRQKNMAYILGLFKFLMNLSKDTFQHERLGEFSFIGKVQWKIFIP
FT KSEFEFFDMYTPKFLKLWSEQHVTYDYIIPKGRDNLLIYLVRKINDPSIVTAMTMQSPL
FT QLRFRMQAKQHMKVCKLDDDWVTFREILAAANSFAQLYEVTQEDLDLFQTLTSCTFSKE
FT YAWKDFLNGVQCDVIPTKQIQRAKVARTFTVREKDQIIQNSIPAVIGYKFAVTVDEMSD
FT VLDSAKFPDSLAVDLKTMKDGVYRELGLDISQAEVMKKVAPMLYKSSKSRVVIVQGNVE
FT GTAEAICGYWLRTMSLVKTIRVKPHKEVLKAVSIFNRKEDIGQQKDLAALRLCIEVWRW
FT CKANNAPYQEWFHALWFEDKTFSEWLDRFIRVGVPPVDPEIQCAALMIADIRGDLSVLQ
FT VQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEIFWDKQTYILETS
FT ITQKHVLKIMMDEVTKELLRCGMRFKTEQVSNVKHLVLFKTEAGFEWGKPNIPCIVYKN
FT CALRTGLRANQTVNHKFMISIKDNGLRAIAQYDDESPRFLLAHAFHTIRDIRYQAVDAV
FT SNVWFIHKGIKLFLNPIISSGLLENFMKNLPAAIPPAAYSLIMNRAKISVDLFMFNDLL
FT RLINPSNTLDLSGLQPTEDGFSTVSSMSSRLWSEEVSFVDEDEEIDDEFTIDLQDVDFE
FT NIDVEADIEHFLQDESSYTGDLLIMSEETEVKKMRGIIKLLEPVRLIKSWVSKGLCIEK
FT VYSPTNIILMTRYLSKNFNFSGRQVSLLDPYDLTEFESIVKGWGECVVDQFSTFDQETQ
FT LLVSQKGICPEDVVPDSLFSFRHTIVLLRRLFPQDSVSTFY"
XX
SQ Sequence 6532 BP; 2130 A; 1107 C; 1344 G; 1951 T; 0 other;
AJ410617 Length: 6532 April 15, 2003 08:31 Type: N Check: 4459 ..
1 tagtagtaga ctccggaaga gacaaactac tataaagatg gaaaaataca
51 gagaaattca tagggatcta caatcctttc cagttgggtc actgacagca
101 gtagagtgta tagactacct ggatcgtctc tatgcaataa ggcatgacat
151 tgttgatcag atgataaagc atgactggtc agataacaag gattcagagg
201 aatctatagg aaaggttttg ctgtttgctg gggtgcctaa taatgttata
251 actgcaatgg aaaaaaagat cattcctgac cacccaagtg gtaaaacact
301 tcgttccttc ttcaagatga cacctgataa ttataagatt acagggtcaa
351 cgattgagtt tgtagaagta acagttactg ttgatgttga caaaggaatc
401 agagagaaaa ggctcaagta tgaggcaggg ctaaagtaca ttgaacaaga
451 actgcataat cattttctta gaggagatat tccacaacct tataagataa
501 catttcaggt tgtctccgtt agaacagatg gttctaatat ctctacacaa
551 tggcctagcc ggaggaatga tggtgttgtt caatacatga ggcttgtaca
601 agctgaaatt agttatgttc gagagcactt gatacggcag gaggaaaggg
651 ctgctctaga agcaatgttc aatctaaaat tcaatataag caacataaaa
701 aatcaaccat attatattcc tgattacaga ggaatcccat taatacatcc
751 aaatattaat gacttagttg tatacatgag ggattggtta tcaaaaagcc
801 ataaattttc atttcatgag ggaaaggtcc ctgctgtgtt tgactgtttt
851 aatgagaatg aacttgagca tgctgttaaa tatcctattt caaggcatcc
901 aaggaacttt ttattgatcc agtgctcact actgtcatcc tacaacccag
951 ctacaatcct ttctgatcag gtcgacagca gacgggcatg taactctgtg
1001 ttgaacttga tccctgaaac accaacctcc ttcttaatac atgatatggc
1051 atataggtat atcaatttga caagagaaga tatggtttca ttttatgcac
1101 ccaaaaccca attcataccc acacagaatg taaaagaacc tggaactttt
1151 aagctgactg ctaactcgat gaggcctgag tcaaaggcaa tgttagacat
1201 gttgggtagc catgagcctg gtgaaaagaa aggtgcccta attgagagtt
1251 taaacctaag cagccatata gtacagtctg aatgcgtcag cctgattact
1301 aaaatacttt ctgaccttga gctcaacata agtgaaccca caagtcatgg
1351 ctcctttaca actaaacata catatgtaga taatgttctt gagaagtttt
1401 ttcaaaatga aattcaaaga tatttattag atgttctaaa aaagacaact
1451 gcatggcata ttgggcatct cattcgggat ataacagaaa gcttaattgc
1501 tcattcaggt ctcaaaagat caaagtactg gtcagtacat gcatacaaca
1551 atgggaatgt cattttattc atactcccat ctaaatcatt ggaggtagca
1601 gggtcttaca taaggtttgt gacagttttt cgaatgggtc cagggctagt
1651 cgataaagac aatctggata caattctgac tgatcaggat gttacctggg
1701 gggtttcaaa ggttatgagt attgatttga acaggttact agcgctcaat
1751 attgcatttg aaaaggcatt aattgctaca gccacatggt ttcaatacta
1801 tacagaggat caaggccagt tccccctaca acatgcaata aggtcagttt
1851 ttgcttacca tttgttgtta gctgtgtgcc agaagatgaa gttgtgtgcc
1901 atttttgaca acttacgata tttaatacct gctgttacat cactttactc
1951 tggattcccc tctcttataa ataagttatt cgagcgcccc tttaagagtg
2001 ctctggaagt atatgtttat tataatatta agagtctact tgtggccctt
2051 gcacaaaata acaaggctag attttattca aaagtaaaac ttttaggtct
2101 aacagtagat caatcaactg ttggagcaag tggaatctac ccgtcattca
2151 tgtcccgtgt catttacaag cactaccgta gcttaatatc agaagtaaca
2201 acttgtttct ttctgtttga aaagggttta catggtaaca tgaatgagga
2251 agcaaagatt caccttgaaa ctgtggagtg ggccctaaaa tttaggcaaa
2301 aagaagacca atatggagaa tccatggttg aaaatggtta cacaataggt
2351 gaactcaatg ataatcaaga tttagttgaa caacaactat attgtcaaga
2401 tgctgtagaa cttgctgctg tagaacttaa taagatttta tcaacaaaat
2451 ctcaggttgt tgccaatagc attcttaata aatattggga ggttccgtat
2501 tttagtcaga ctaggaatat aagtttaaag gggatgtcag gccaagttca
2551 agaagatgga catcttgctg catctgttac aatcatagag gcaatacgtt
2601 atctctcatc ttcacagaac aatccaagtg ttctacaact ttatgaagag
2651 actagaaaag tgaaagctca agcacgaatt gttagaaaat atcagagaac
2701 agaggctgat agaggttttt ttattacaac actcccaaca cgatgtaggt
2751 tagaaataat tgaagattat tacgatgcca tctcaaaaaa tgtggctgaa
2801 gagtacatct cctatggtgg tgaaaggaaa attttatgta ttcaatcagc
2851 tttagaaaaa gcacttagat gggcttctgg agagagcttt attgaactta
2901 gcaacggaaa gtttataagg atgaaaagaa aattgatgta tgtgagtgct
2951 gatgcaacga aatggtctcc tggagataac tcagctaaat tcagaagatt
3001 cacagcagct ctacataatg gactacctga tgaccgttta aaaaattgtg
3051 taattgatgc attaaggaat gtttacaaaa ctgacttcta tatgtccagg
3101 aaattaaggg cttatataga taacatgaat gggcatgagc cagctgttaa
3151 gaatttcctg gaattcttcc ctgatggtca ttgtggagaa gtgcggggca
3201 attggttgca gggaaatcta aataagtgtt catctctttt tggtgtagga
3251 atgtcgttgc tatttaagca actttggaat gaattattcc ctgaattaga
3301 ctgcttcttt gaatttgctc accactcaga tgatgcgctc tttatatatg
3351 gttaccttga accaattgat gatggaactg attggtttct atatgtgtct
3401 caacagatcc aagcaggtca tttacactgg tttagtgtga acacagaaat
3451 gtggaaaagt atgttcaatc tgcatgaaca cgtacttctc ctaggttcca
3501 taaagatatc ccccaagaag acaacactat caccaactaa tgcggaattc
3551 ctctctacgt tctttgaaag ctgtgctgtg tcaataccct ttatcaaaat
3601 attgttaggt tctctatcag atttgcctgg tttaggttac tttgatgacc
3651 ttgctgctgc tcaaagtaga tgtgtcaaag caatggacct tggtgcatca
3701 ccacaagttg cccaacttgc tgttgcacta tgcacaaata aggttgaaag
3751 attatatggg acagctgttg gtatgataaa acatccatca acatatcttc
3801 aagtcaagca tggtgataca cctattcctc taggtggaag tggtgccatg
3851 tcaataatgg agctagcaac tgctggtatt ggtatgtctg ataaaaatct
3901 cttaaaaagg gcacttttag gctacataca taaaaggcaa aaaaatatgg
3951 catatattct tggccttttt aaattcttaa tgaacttatc aaaagataca
4001 ttccagcatg aaagattggg tgagttttca ttcataggga aagtgcaatg
4051 gaaaatattt ataccgaaat cagagtttga gttttttgac atgtacacac
4101 caaaattctt aaagctatgg agtgaacaac atgttactta tgattacatt
4151 attccaaagg gtagagataa tctattaatc tatcttgtta ggaaaataaa
4201 tgatccaagc atagtcactg ctatgacaat gcaatcacca ctccagttaa
4251 gattcagaat gcaagcaaag caacacatga aagtttgcaa attggatgat
4301 gactgggtta catttaggga gatcttagct gcagcaaata gttttgcaca
4351 attgtatgag gtaactcaag aagatcttga tctttttcag acactaacaa
4401 gttgtacatt ttcaaaggaa tatgcatgga aagatttctt gaatggggtg
4451 cagtgtgatg ttattcctac gaagcagatc cagagggcaa aagtggccag
4501 aacattcact gtgagagaaa aagatcagat cattcaaaat agtatcccag
4551 ctgtgattgg gtataaattt gcagtaacag ttgatgaaat gtcagatgtt
4601 ttggattctg caaagttccc tgactctcta gctgtagatc tgaagacaat
4651 gaaagatggg gtttataggg aacttgggtt ggatatctca caggctgaag
4701 taatgaagaa ggttgcacct atgctatata agagctcaaa gtcaagggtt
4751 gttattgttc aaggaaatgt ggagggcaca gcagaggcta tctgtggtta
4801 ctggttacgt accatgtccc ttgtgaaaac tattagggtt aaaccgcata
4851 aagaagtatt gaaagctgta tccatcttta acagaaaaga ggatattggg
4901 caacaaaaag accttgctgc attgcgattg tgcatagaag tttggcgctg
4951 gtgtaaagca aataatgcac cctatcaaga atggtttcat gctctgtggt
5001 ttgaagacaa aacattttct gagtggcttg atagattcat ccgtgtcggt
5051 gtccctccag tggacccaga gatccagtgt gctgcactaa tgattgcaga
5101 tatcagaggt gatctatctg tcctacaagt acaggcaaat agaagagctt
5151 attcaggtaa acaatatgat gcctattgtg ttcagacata taacgaagaa
5201 acaaagctct atgaaggtga ccttcgagtc acattcaatt ttggactaga
5251 ctgtgcccgc cttgaaatat tctgggacaa acaaacatac atccttgaga
5301 cttcaataac acaaaaacat gttttgaaga tcatgatgga tgaagtaaca
5351 aaagagttgt taaggtgtgg aatgaggttt aaaactgaac aagtgtctaa
5401 tgtgaaacac ctagttttgt tcaagacaga ggcaggtttt gagtggggaa
5451 agcctaatat tccttgcatt gtatataaaa actgtgcact acgtacaggt
5501 ttaagagcaa accaaactgt taaccacaaa ttcatgatat caattaagga
5551 taacggcctt agagctattg cacaatatga tgatgaaagt cctcggtttt
5601 tacttgcaca tgcatttcat acaataaggg atattagata ccaggcagta
5651 gatgctgtaa gtaatgtgtg gtttatccat aaggggataa aactattcct
5701 taacccaatt atttcatcag gtttattaga aaatttcatg aaaaatttac
5751 cagcagcaat acctcctgct gcatactcat taatcatgaa tagagctaag
5801 atatctgttg atctattcat gttcaatgat ttacttaggc tcatcaaccc
5851 atcaaatacg cttgacctat ccggtttgca gccaactgaa gatgggttta
5901 gcactgtaag cagtatgtca agcagattat ggtctgaaga ggttagtttt
5951 gttgatgaag atgaagagat tgatgatgag ttcacaatag acttgcagga
6001 tgtggatttt gaaaacattg atgtggaagc tgatattgaa catttcttac
6051 aagatgaaag ttcatataca ggtgacttac tcattatgtc agaagaaact
6101 gaagtcaaga agatgagagg aattataaaa ctgctagagc ctgttagact
6151 tataaaaagc tgggtttcca aaggtttatg tattgagaag gtatatagcc
6201 caaccaatat tatattgatg actagatatc tttcaaaaaa tttcaatttt
6251 tctggtagac aagtttccct tttagaccca tatgacttga ctgagtttga
6301 aagcattgtt aaaggttggg gagaatgtgt tgttgatcag ttcagtacat
6351 ttgatcagga gacacagctt ttggtatctc agaaaggcat ctgcccagag
6401 gatgtggtac ctgattccct tttttcattt aggcatacta tagttctctt
6451 acgtagactt tttcctcagg actctgtttc aactttctac taattgttta
6501 tatttatttt cattttccgg agcatactac ta