Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus NSs gene and N gene, genomic RNA, isolate LE98/527
ACC No: AJ418781
Dated: 2003-09-22 | Length: 2965 | CRC: 132975090
!!NA_SEQUENCE 1.0
ID TSP418781 standard; genomic RNA; VRL; 2965 BP.
XX
AC AJ418781;
XX
SV AJ418781.1
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DT 02-MAY-2002 (Rel. 71, Created)
DT 22-SEP-2003 (Rel. 77, Last updated, Version 2)
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DE Tomato spotted wilt virus NSs gene and N gene, genomic RNA, isolate
DE LE98/527
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KW N gene; N protein; NSs gene; NSs protein.
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-2965
RA Adam G.;
RT ;
RL Submitted (05-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL Adam G., Pflanzenschutz, Institut fuer ANgewandte Botanik, Ohnhorststrasse
RL 18, 22609 Hamburg, GERMANY.
XX
RN [2]
RA Heinze C., Willingmann P., chwach F., Adam G.;
RT "An unusual large intergenic region in the S-RNA of a Bulgarian tomato
RT spotted w ilt virus isolate";
RL Arch. Virol. 148:199-205(2003).
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DR GOA; Q88910.
DR SPTREMBL; Q88910; Q88910.
DR SPTREMBL; Q8JXJ9; Q8JXJ9.
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FH Key Location/Qualifiers
FH
FT source 1. .2965
FT /country="Germany"
FT /db_xref="taxon:11613"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Tomato spotted wilt virus"
FT /isolate="LE98/527"
FT /specific_host="Lysimachia sp."
FT CDS 89. .1489
FT /db_xref="SPTREMBL:Q8JXJ9"
FT /gene="NSs"
FT /product="NSs protein"
FT /protein_id="CAD11451.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ
FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNTNGVKHQGHLKVLSLAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPSFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQVSIQKLFKVAGDETKTFYLSIA
FT CIPNHNSVETALNVSVICKHQLPIRKCKAPFGLSMMFSDLKEPYNIVHDPSYPQRIVHA
FT LLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKTL
FT ECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQPVSVAKSLLKLDLSGIEKKESKIP
FT ETYASGSK"
FT CDS complement(2038. .2814)
FT /db_xref="GOA:Q88910"
FT /db_xref="SPTREMBL:Q88910"
FT /gene="N"
FT /product="N protein"
FT /function="structural protein"
FT /protein_id="CAD11452.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
XX
SQ Sequence 2965 BP; 937 A; 550 C; 479 G; 999 T; 0 other;
AJ418781 Length: 2965 September 30, 2003 08:38 Type: N Check: 4342 ..
1 agagcaatcg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt cgatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggcactg
201 gttctccact agttcaaacc cagctgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcattaatat tgatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatacta acggagtgaa acatcaaggt catttgaaag ttttgtctct
451 tgctcagctc cactctattg gatctaccat gaacagatct gatattacag
501 accgattcca gcttcaagaa aaagacataa ttcccaatga cagatacatc
551 gaggctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttggg caaagtgaat gttttatccc
651 ctaacaggaa tgtccatgaa tggctgtaca gtttcaagcc aagtttcaat
701 caagttgaaa gcaacaacag aactgtaaat tctcttgcag tgaaatctct
751 tctcatgtca gcagaaaaca acatcatgcc taactctcag gcttttgtca
801 aagcttccac tgattctcat ttcaaactga gcctctggct aagggtccca
851 aaggttctga agcaggtctc tattcagaaa ttgttcaaag ttgcaggaga
901 cgaaacaaaa acattttatt tatctattgc ttgcattcca aaccataaca
951 gtgttgagac agctttaaac gtttctgtta tttgcaagca tcagctccca
1001 attcgtaaat gtaaagctcc ttttggatta tcaatgatgt tttctgattt
1051 aaaggagcct tacaacattg ttcatgatcc ttcatatcct cagaggattg
1101 ttcatgctct gcttgaaact cacacatctt ttgcacaagt tctttgcaac
1151 aacttacaag aagatgtgat catctacact ttgaacaact atgagctaac
1201 tcctggaaag ttagatttag gcgaaagaac cttaaattac agtgaagata
1251 tctgcaaaag gaaatatttc ctttcaaaaa cacttgaatg tcttccatct
1301 aacacacaaa ctatgtctta cttggacagc atccaaatcc cttcctggaa
1351 gatagacttt gccaggggag aaattaagat ttctccacaa cctgtttcag
1401 ttgcaaaatc tttgttaaag cttgatttaa gcgggatcga aaagaaagaa
1451 tctaagattc cggaaacata tgcttcagga tcaaaataat cttgctgtgt
1501 ccggtttttc taattatgtt atgtttattt tctttcttta cttataatta
1551 tttctctgtt ttgtcatttc ttttaagttc ctcctgttta atagaaacca
1601 taaaacaaaa aataaaataa aaataaaaat aaaatcaaaa atgaaacaaa
1651 aatcaaaaaa tgaaacaaaa ataaaaaata aaaaatgaaa taaaaacaac
1701 aaaaaattaa aaaacaaaaa cccaaaaaag atcccgaaag ggacaatctt
1751 ggccaaattt gggttttgtt ttgtttttgt tttttgtttt ttgtttttat
1801 ttttattttt attttattta tttattttat tttattttta ttttttattt
1851 tgttttttat tttatgtttt tttgttgttt ttgttatttg tttatttatt
1901 aagcataaca cacagaaagc aaactttaat taaacacact tattttaaat
1951 ttaacacact aagcaagcac aagcaataaa gataaagaaa gctttatata
2001 tttgtagact tttccataat ttaacttaca actgatttta agcaagttct
2051 gcgagttttg cctgtttttt aaccccgaac atttcataga acttgttaag
2101 agtttcactg taatgttcca tagcaatact tcctttagca ttaggattgc
2151 tggagctgag tatagcagca tactctttcc ctttcttcac ctgatcttca
2201 ttcatttcga atgctttgct tttcagcaca gtgcaaactt ttcctaaggc
2251 ttctctggtg tcatacttct ttgggtcaat cccgaggtct ttgtattttg
2301 catcctgata tatagccaag acaacactga tcatctcaaa gctatcaact
2351 gaagcaataa gaggtaagct acctcccagc attatggcaa gcctcacaga
2401 ctttgcatca tcaagaggta atccataggc ttgaatcaaa gggtgggaag
2451 caatcttaga tttgatagta ttgagattct cagaattccc agtttcctct
2501 acaagcctga ccctgatcaa gctatcaagc cttctgaagg tcatgtcagt
2551 ggctccaatc ctgtctgaag ttttctttat ggtaatttta ccaaaagtaa
2601 aatcactttg tttaataacc ttcattatac tctgacgatt cttcaggaat
2651 gtcagacatg aaataacgct catcttcttg atctggtcga ggttttccag
2701 acaaaaagtc ttgaagttga atgctaccag attctgatct tcctcaaact
2751 caaggtcttt gccttgtgtc aacaaagcaa caatgctttc cttagtgagc
2801 ttaaccttag acatgatgat tgtagaagtt gttatatgct ttgaccgtat
2851 gtaattcaag gtgcgaaagt gcaactctgt attccgcagt cgtttcttag
2901 ggttttaatg tgatgatttg taagactgag tgttaaggtt tgaataaaat
2951 tgacacgatt gctct