Sequence of DPV Sweet potato mild mottle virus

Sweet potato mild mottle virus partial cp gene for polyprotein, genomic RNA, isolate RUK

ACC No: AJ459315

Dated: 2003-04-30 | Length: 1813 | CRC: -1390899192

                !!NA_SEQUENCE 1.0
ID   SPO459315  standard; RNA; VRL; 1813 BP.
XX
AC   AJ459315;
XX
SV   AJ459315.1
XX
DT   06-JAN-2003 (Rel. 74, Created)
DT   30-APR-2003 (Rel. 75, Last updated, Version 3)
XX
DE   Sweet potato mild mottle virus partial cp gene for polyprotein, genomic
DE   RNA, isolate RUK
XX
KW   coat protein; cp gene; NIb gene; nuclear inclusion b protein; polyprotein.
XX
OS   Sweet potato mild mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1813
RA   Mukasa S.B.B.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Mukasa S.B.B., Department of Plant Biology, Uppsala Genetics Centre, SLU,
RL   Box 7080, SE 750 07 Uppsala, SWEDEN.
XX
RN   [2]
RA   Mukasa S.B., Rubaihayo P.R., Valkonen J.P.T.;
RT   "Sequence variability within the 3'-proximal part of the Sweet potato mild
RT   mottle virus genome";
RL   Arch. Virol. 148(2):487-496(2003).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1813
FT                   /country="Uganda"
FT                   /db_xref="taxon:41459"
FT                   /virion
FT                   /organism="Sweet potato mild mottle virus"
FT                   /specific_host="sweet potato"
FT                   /isolate="RUK"
FT   CDS             <1. .1506
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="CAD30639.1"
FT                   /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKIFVTRPDIRYVCNGDDLL
FT                   INCPKGVASAISEHFKDAFADLSLNYDFDHVCDSITDVDFMSHSFMWLDSEQMFIPKLD
FT                   KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMDEIEKFSHFWAKEHGLNNVLME
FT                   REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSRTIEELQQEMEDLDADTTI
FT                   TVVQRETQKARIRDQIEALRAQQIVRPPEAQLQPDVNPTQIVTFEPPRVTGFGALWIPR
FT                   QQRNYMTPAYIEKIQGYVPHSNLIESVLASEAQLTSWFENTSRDYQVSMDVFMSSILPA
FT                   WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ
FT                   AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMPLTTKQMEVKHQIIAAN
FT                   VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT   mat_peptide     679. .1506
FT                   /note="CP"
FT                   /product="coat protein"
FT   mat_peptide     1. .678
FT                   /note="NIb"
FT                   /product="nuclear inclusion b"
XX
SQ   Sequence 1813 BP; 520 A; 353 C; 453 G; 487 T; 0 other;

  AJ459315  Length: 1813  May 13, 2003 09:00  Type: N  Check: 4518  ..

       1  ggtaacaata gtgggcagcc ctcaacagtt gttgacaata cattgatcct
      51  gatgattgct atggagtacg cgatagccaa gatttttgtt acacgtcccg
     101  acatcaggta tgtctgcaat ggggatgacc tcttgattaa ttgcccgaag
     151  ggtgttgcaa gcgccattag tgagcatttc aaagacgcat tcgctgattt
     201  aagtctaaac tatgactttg atcatgtttg tgattcaatt acagacgttg
     251  attttatgag tcatagcttt atgtggctgg attctgaaca gatgtttata
     301  ccaaagttgg ataaggagcg aattgtggca atcttggagt gggagaggag
     351  tgatgagcaa ttcagaacaa ggagcgccct gaacgctgct tatatcgaga
     401  gttttggata tgaagatttg atggatgaga ttgaaaaatt ttctcatttt
     451  tgggctaagg agcatggtct caataacgtc ttgatggagc gagaaaaggt
     501  tagagacttg tacgtcaatg aagatttcga cgcgtcggcc tttgagaagt
     551  tctatccgga aactttttca ccatttgacg tttatgttga accacatgca
     601  tcgacatcca gaacaatcga agaactgcag caagaaatgg aggatttaga
     651  cgcggatacg acaatcactg tggtccagag agaaacacag aaggcaagga
     701  ttagagacca aattgaggca cttagggcac aacaaattgt gagacctcct
     751  gaagcacagc tacagcctga cgtaaatccc actcaaattg ttacgtttga
     801  accaccaaga gtcactggat ttggcgcttt atggattccg cgccaacaaa
     851  ggaactacat gacgccagct tatatcgaga agatacaagg ttatgttcca
     901  cactcaaact tgattgaatc tgtactagct agtgaagctc aattgactag
     951  ttggttcgag aacacgagca gggattacca agttagtatg gatgtcttta
    1001  tgagttcaat actgccagca tggattgtca attgcataat caatggaaca
    1051  tctcaggagc gcactaacga gcatacatgg agggctgtga tcatggcgaa
    1101  tatggaggat caagaagtgc tttattaccc catcaagccc ataataatca
    1151  atgctcaacc aactctgagg caggtgatgc gccatttcgg agaacaagcc
    1201  gttgctcaat acatgaacag ccttcaagtg ggaaaaccat ttacagtgaa
    1251  aggtgccgtg actgctggtt acgctaatgt tcaagatgcc tggctaggta
    1301  ttgacttcct ccgagacacg atgccgttga ctacgaaaca gatggaagtc
    1351  aagcaccaaa ttatcgcagc gaatgtcaca aggcggaaaa tccgtgtttt
    1401  tgctcttgca gcaccggggg atggcgatga actagacaca gaaaggcacg
    1451  tcgtcgacga tgtggctcgg ggccgtcata gtctgagagg agctcaactc
    1501  gactaaatga gcacgttatc tttaatttca actgcgtgtt tttatattaa
    1551  ttacgtttca tgctttgtgt ttgtttgttg tggcacttga accaggtaca
    1601  gctggcaggt gtttcggcat ggtgtggtta gacaattggt tcgcaccggt
    1651  ggtctaagaa gcgctatgta tcacgtggtt ggttaattca tgactatatg
    1701  gatcaatcaa gaagcgtcta tcgcccaaaa gggcaccaga aaatggttgc
    1751  gtcattcgtg gcgtaatcag tttttggagt ttggctaggt aacttgttgc
    1801  ctatccaaaa gcc