Sequence of DPV Sweet potato mild mottle virus

Sweet potato mild mottle virus partial cp gene for polyprotein, genomic RNA, isolate RUK2

ACC No: AJ459316

Dated: 2003-04-30 | Length: 1814 | CRC: 1220881577

                !!NA_SEQUENCE 1.0
ID   SPO459316  standard; RNA; VRL; 1814 BP.
XX
AC   AJ459316;
XX
SV   AJ459316.1
XX
DT   06-JAN-2003 (Rel. 74, Created)
DT   30-APR-2003 (Rel. 75, Last updated, Version 3)
XX
DE   Sweet potato mild mottle virus partial cp gene for polyprotein, genomic
DE   RNA, isolate RUK2
XX
KW   coat protein; cp gene; NIb gene; nuclear inclusion b protein; polyprotein.
XX
OS   Sweet potato mild mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1814
RA   Mukasa S.B.B.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Mukasa S.B.B., Department of Plant Biology, Uppsala Genetics Centre, SLU,
RL   Box 7080, SE 750 07 Uppsala, SWEDEN.
XX
RN   [2]
RA   Mukasa S.B., Rubaihayo P.R., Valkonen J.P.T.;
RT   "Sequence variability within the 3'-proximal part of the Sweet potato mild
RT   mottle virus genome";
RL   Arch. Virol. 148(2):487-496(2003).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1814
FT                   /country="Uganda"
FT                   /db_xref="taxon:41459"
FT                   /virion
FT                   /organism="Sweet potato mild mottle virus"
FT                   /specific_host="sweet potato"
FT                   /isolate="RUK2"
FT   CDS             <1. .1506
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="CAD30640.1"
FT                   /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL
FT                   INCPRATASAISEHFKDAFADLSLNYDFDHVCDSITDVDFMSHSFMWLDAEQMYIPKLD
FT                   KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMVEIEKFAHFWAKEHGLNDVLME
FT                   REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQQEMEDLDADTTI
FT                   TVVQRETQKARIRDQIEALRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVTGFGALWIPR
FT                   QQRNYMTPAYIEKIKAYVPHSNLIESGLASEAQLTSWIESTCRDYQVSMDVFMTTVLPA
FT                   WIVNCIINGTSQERTNEHTWRAVVMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQ
FT                   AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMPLTTKQMEVKHQIIAAN
FT                   VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT   mat_peptide     679. .1506
FT                   /note="CP"
FT                   /product="coat protein"
FT   mat_peptide     1. .678
FT                   /note="NIb"
FT                   /product="nuclear inclusion b"
XX
SQ   Sequence 1814 BP; 531 A; 348 C; 450 G; 485 T; 0 other;

  AJ459316  Length: 1814  May 13, 2003 09:00  Type: N  Check: 4281  ..

       1  ggtaacaata gtgggcagcc ctcaacagtt gttgataaca cgttgatctt
      51  gatgattgct atggaatatg cgatagccaa ggtttttgtt acacgccctg
     101  acatcaagta tgtctgtaat ggggatgacc tcttgatcaa ttgtccaagg
     151  gccactgcaa gcgccattag tgaacatttc aaagatgcat tcgcagactt
     201  aagcttgaac tatgattttg atcatgtgtg tgattcaatt acagatgttg
     251  attttatgag tcacagcttc atgtggttag atgctgagca aatgtatata
     301  ccaaagctgg acaaggagcg gattgtggca atattggagt gggaaagaag
     351  tgatgagcaa ttcagaacaa ggagcgccct gaatgctgcc tatattgaaa
     401  gttttggata tgaagatttg atggttgaga ttgaaaaatt tgctcacttt
     451  tgggcaaaag agcatggtct caatgacgtc ttgatggagc gagaaaaggt
     501  tagagacttg tacgttaatg aagactttga tgcgtcagcc tttgagaagt
     551  tctatccgga aacattttca ccatttgacg tttatgttga accacatgca
     601  tcaacgtcca agacaatcga agaactgcag caagaaatgg aggatttgga
     651  tgcagacaca acaatcactg tggtccagag ggaaacacag aaggcaagga
     701  taagagacca aatcgaggca cttagggcac aacaaattgt gagaccttct
     751  gaagcacagc tacagcctga cgtaactccc actcaaatag tcacgtttga
     801  accaccaaga gtcactggat ttggcgcttt atggattccg cgccaacaaa
     851  gaaactacat gacgccagct tacatcgaga agataaaggc ttatgttcca
     901  cactcaaact tgattgaatc tggactagct agtgaagctc aattgactag
     951  ttggatcgaa agcacgtgca gggactatca agttagtatg gatgtcttca
    1001  tgactacagt gctgccagca tggattgtta attgcataat caatggaaca
    1051  tctcaggagc gcactaatga acacacatgg agagctgtgg ttatggcaaa
    1101  tatggaagat caggaggtgc tttattaccc tatcaagccc ataattgtaa
    1151  acgctcaacc aactttgagg caagtgatgc gtcattttgg cgagcaagct
    1201  gtcgcacaat acatgaacag tctccaagtt ggaaaacctt tcacagtgaa
    1251  aggcgccgta actgctggtt acgctaatgt tcaagatgct tggttgggta
    1301  ttgactttct ccgagacacg atgccgttga cgacaaaaca gatggaagtt
    1351  aagcatcaaa ttatcgcagc gaacgtcaca aggcggaaaa tccgtgtttt
    1401  cgctcttgca gcaccggggg atggcgacga actagacaca gaaaggcacg
    1451  tcgtcgacga tgtggctagg ggccgtcata gtctgagagg agctcaactc
    1501  gattaaatga gcacgttatc tttaatttca gctacgtgtt tttatcttaa
    1551  ttatgtcttg tgctttgtgt ttgtttgttg tggcacttga accaggtaca
    1601  gctggcaagt gtttcggcat ggtgtggtta gacaattggt tcgcaccggt
    1651  ggtctaagaa gcgctatgta tcacgtggtt ggttaattca taatttgtat
    1701  ggatcaatca agaagcgtct atggcccaga agggcaccag aaaatggtta
    1751  cgtcattcgt ggcgtaatca atttttggag tttggctagg taacttgttg
    1801  cctacccaaa agcc