Sequence of DPV Blotched snakehead virus
Channa lucius virus genomic segment A for polyprotein and VP5 protein, genomic RNA
ACC No: AJ459382
Dated: 2002-12-19 | Length: 3429 | CRC: -1291437042
!!NA_SEQUENCE 1.0
ID BSN459382 standard; RNA; VRL; 3429 BP.
XX
AC AJ459382;
XX
SV AJ459382.1
XX
DT 19-DEC-2002 (Rel. 74, Created)
DT 19-DEC-2002 (Rel. 74, Last updated, Version 1)
XX
DE Channa lucius virus genomic segment A for polyprotein and VP5 protein,
DE genomic RNA
XX
KW polyprotein; VP2 protein; VP2a protein; VP2b protein; VP2c protein;
KW VP2d protein; VP3 protein; VP4 protein; VP5 protein; X protein.
XX
OS Channa lucius virus
OC Viruses; dsRNA viruses; Birnaviridae; Avibirnavirus.
XX
RN [1]
RP 1-3429
RA Delmas B.;
RT ;
RL Submitted (30-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL Delmas B., Sante Animale, Institut National Recherche Agronomique, Unite
RL VIM, Batiment de Biotechnologies, INRA, 78350 Jouy-en-Josas, FRANCE.
XX
RN [2]
RA Da Costa B., Soignier S., Chevalier C., Henry C., Thory C., Huet J.C.,
RA Delmas B.;
RT "Blotched snakehead virus is a new aquatic birnavirus that is slightly more
RT related to avibirnavirus than to aquabirnavirus";
RL J. Virol. 77(1):719-725(2003).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3429
FT /country="Viet Nam"
FT /db_xref="taxon:194515"
FT /note="segment A"
FT /virion
FT /organism="Channa lucius virus"
FT /specific_host="Blotched Snakehead fish"
FT CDS 166. .3375
FT /evidence=EXPERIMENTAL
FT /transl_table=1
FT /product="polyprotein"
FT /protein_id="CAD30689.1"
FT /translation="MDFSKENTQIRYLNSLLVPETGSTSIPDDTLDRHCLKTETTTENL
FT VAALGGSGLIVLFPNSPSGLLGAHYTKTPQGSLIFDKAITTSQDLKKAYNYARLVSRIV
FT QVRSSTLPAGVYALNGTFNGVTYIGSLSEIKDLDYNSLLSATANINDKVGNVLVGDGVA
FT VLSLPAGSDLPYVRLGDEVPSSAGVARCSPSDRPRHYNANNKQVQVGTTDTKTNGFNID
FT ATTPTEVTVDMQIAQIAAGKTLTVTVKLMGLTGAKVASRSETVSGNGGTFHFSTTAVFG
FT ETEITQPVVGVQVLAKTNGDPIVVDSYVGVTVHGGNMPGTLRPVTIIAYESVATGSVLT
FT LSGISNYELIPNPELAKNIQTSYGKLNPAEMTYTKVVLSHRDELGLRSIWSIPQYRDMM
FT SYFREVSDRSSPLKIAGAFGWGDLLSGIRKWVFPVVDTLLPAARPLTDLASGWIKNKYP
FT EAASGRPLAASGRPMAASGTFSKRIPLASSDEIDYQSVLALTIPGTHPKLVPPTEREPN
FT STPDGHKITGAKTKDNTGGDVTVVKPLDWLFKLPCLRPQAADLPISLLQTLAYKQPLGR
FT NSRIVHFTDGALFPVVAFGDNHSTSELYIAVRGDHRDLMSPDVRDSYALTGDDHKVWGA
FT THHTYYVEGAPKKPLKFNVKTRTDLTILPVADVFWRADGSADVDVVWNDMPAVAGQSSS
FT IALALASSLPFVPKAAYTGCLSGTNVQPVQFGNLKARAAHKIGLPLVGMTQDGGEDTRI
FT CTLDDAADHAFDSMESTVTRPESVGHQAAFQGWFYCGAADEETIEELEDFLDSIELHSK
FT PTVEQPQTEEAMELLMELARKDPQMSKILVILGWVEGAGLIDALYNWAQLDDGGVRMRN
FT MLRNLPHEGSKSQRRKHGPAPESRESTRMEVLRREAAAKRKKAQRISEDAMDNGFEFAT
FT IDWVLENGSRGPNPAQAKYYKATGLDPEPGLTEFLPEPTHAPENKAAKLAATIYGSPNQ
FT APAPPEFVEEVAAVLMENNGRGPNQAQMRELRLKALTMKSGSGAAATFKPRNRRPAQEY
FT QPRPPITSRAGRFLNISTTLS"
FT mat_peptide 169. .1416
FT /product="VP2 protein"
FT mat_peptide 1417. .1545
FT /product="VP2a protein"
FT mat_peptide 1546. .1566
FT /product="VP2b protein"
FT mat_peptide 1567. .1587
FT /product="VP2c protein"
FT mat_peptide 1588. .1623
FT /product="VP2d protein"
FT mat_peptide 1624. .1836
FT /product="X protein"
FT mat_peptide 1837. .2538
FT /product="VP4 protein"
FT /function="serine/lysine protease"
FT mat_peptide 2539. .3372
FT /product="VP3 protein"
FT CDS 452. .871
FT /product="VP5 protein"
FT /protein_id="CAD30690.1"
FT /translation="MPDLSAALCRCGAQRSPRVSTHSTGPSMGLPTLEVSARSRTWTTI
FT HFSLQRPTSMTRSAMYLLETVSQCSHFLLEATCLMLDLAMKFQALLESRDALPPTDLGT
FT TMPTTNRSRSARPTPRPMGSTSTQQHPQRSRSTCR"
XX
SQ Sequence 3429 BP; 978 A; 991 C; 870 G; 590 T; 0 other;
AJ459382 Length: 3429 January 14, 2003 16:43 Type: N Check: 5897 ..
1 ggaaagagag tgttgaccaa gggtgactcc cctaggtcac ccttgattgg
51 tgcctaccac ataggccact tccaaaacca atattcaaca ctgctaactg
101 attttgacca agctttcaga taattgcaac cagagtacta caaacaacta
151 acatcaaacg ttcaaatgga tttctcaaag gaaaatacac agatcagata
201 ccttaactcc cttctcgttc cagagaccgg gtccacatcc attccagatg
251 acactcttga cagacattgt ctgaaaacag agaccacaac agaaaatcta
301 gtggcagctc tgggagggag cggactaatc gttctctttc caaactcacc
351 atcaggccta ctgggggcac attacaccaa aaccccccaa gggtctctaa
401 tttttgacaa ggccatcaca acatcccaag acctcaagaa agcgtacaac
451 tatgccagac ttgtcagccg cattgtgcag gtgcggagct caacgctccc
501 cgcgggtgtc tacgcactca acgggacctt caatggggtt acctacattg
551 gaagtctcag cgagatcaag gacctggact acaattcact tctctctgca
601 acggccaaca tcaatgacaa ggtcggcaat gtacttgttg gagacggtgt
651 cgcagtgctc tcacttcctg ctggaagcga cctgccttat gttagacttg
701 gcgatgaagt tccaagctct gctggagtcg cgagatgctc tccctccgac
751 agacctaggc actacaatgc caacaacaaa caggtccagg tcggcacgac
801 cgacaccaag accaatgggt tcaacatcga cgcaacaaca cccacagagg
851 tcacggtcga catgcagata gctcagatag ccgcagggaa gaccctcacg
901 gtaactgtca aactaatggg tctgactgga gccaaggtgg catccagatc
951 agagacagtc tccgggaatg gcgggacgtt ccacttcagc acgacagctg
1001 tgtttggaga gacggagatc acacaaccag tcgttggagt acaggttctc
1051 gccaagacga acggagaccc cattgtggtt gacagctacg tgggggtcac
1101 agtacatgga gggaacatgc ccggaacact gagacccgtg acaataattg
1151 cctacgagtc agtggcaaca ggcagcgttc tcacactcag cggcatttcc
1201 aactacgagc taataccaaa cccagaactg gcaaagaaca tccaaaccag
1251 ctacggcaaa ctcaatcctg cagagatgac ctacacgaaa gtggtactct
1301 cacacaggga tgaactaggg ctgaggtcga tctggtcaat cccccagtac
1351 agggacatga tgtcctactt cagggaagtt tcagaccgat catcacccct
1401 caagatagca ggggccttcg gttggggcga cctcctttct ggaatcagga
1451 agtgggtctt tccagtcgtg gacaccctgc tacccgcagc gagaccattg
1501 acagatttgg ccagcgggtg gataaagaac aagtatccgg aggctgcgtc
1551 cgggagaccg ctagccgcgt ctggcaggcc catggcggcg tcagggacct
1601 tctccaagag aatacccctg gccagctcag acgaaattga ctaccaatcg
1651 gttttagcat tgacaatccc cgggacgcac ccgaaactag ttccaccaac
1701 tgaaagagaa ccaaacagca ctcctgacgg acacaagata accggggcca
1751 agaccaagga caacacggga ggcgacgtca ccgttgtcaa gcctctggac
1801 tggctgttca aactgccatg cctgaggcca caagcggcgg acctgcccat
1851 cagcctcctg cagaccctgg cctacaaaca gccacttggc aggaactcga
1901 ggattgtcca tttcaccgac ggggccttgt tccccgtcgt tgcattcggt
1951 gacaatcact caacaagtga gctctacatc gcagtaaggg gcgaccacag
2001 agacctaatg tcgcccgacg tgcgagactc atatgcccta acaggagacg
2051 accacaaggt ttggggagca acacaccata catactacgt tgagggagcg
2101 cccaagaagc ccctgaagtt caacgtcaaa acccgaactg atctgaccat
2151 ccttccagta gcagatgtct tctggcgggc cgatggaagc gctgatgtcg
2201 atgtcgtctg gaacgacatg ccagcagtgg ctggccaaag cagctccatc
2251 gccctcgccc tagcctcatc cctcccgttc gttccaaagg cagcatacac
2301 cggctgccta tcggggacaa acgttcaacc tgtgcaattt gggaacctaa
2351 aagccagggc agcacacaaa attgggctgc cactggttgg catgacccag
2401 gacgggggag aggacacacg gatctgcacg ctagacgacg cagcagacca
2451 cgccttcgac agcatggagt caacagtcac ccgcccagag agcgtcggac
2501 accaggctgc atttcagggc tggttctact gcggagcagc tgacgaggaa
2551 accattgaag agcttgagga ctttctcgac agcatagaac tacattcaaa
2601 gcccaccgtc gaacaaccgc aaacagaaga ggcaatggag ctcctaatgg
2651 agctggccag gaaggaccca caaatgagca agatactagt catacttggg
2701 tgggtggaag gggcaggcct catcgatgcc ctatacaact gggcccagct
2751 tgacgacggc ggagtgcgaa tgagaaacat gctgaggaac ctgccacatg
2801 agggctccaa gtcccaacga aggaaacacg gccccgcacc agagagcaga
2851 gaatcaacca gaatggaggt gctgagacgg gaggcggccg caaaaagaaa
2901 gaaggcccaa cggatcagcg aagacgccat ggacaacgga tttgagttcg
2951 caactattga ctgggttctg gagaacggct caaggggccc aaaccccgca
3001 caagccaagt actacaaagc aacaggcctt gacccagaac ccggactgac
3051 cgaattccta ccggaaccga cccatgcacc tgaaaacaag gcggcaaaac
3101 tagcagccac catctacggg tcacccaacc aggccccagc accaccagag
3151 tttgtagaag aagttgcagc agttctaatg gaaaacaacg gaagaggccc
3201 caaccaagcc caaatgagag agctaagact gaaagcattg accatgaaat
3251 caggtagcgg agccgctgcc acgttcaagc ccagaaacag acgaccagca
3301 caggaatacc aaccacgccc cccgataaca tcaagggcag ggaggttcct
3351 caacatcagt acgactctga gctagaactg cggatggggt gccccaacac
3401 cccaaccagc agcggcgtct ttcgcccaa