Sequence of DPV Blotched snakehead virus
Channa lucius virus VP1 gene for RNA-dependent RNA polymerase, genomic RNA
ACC No: AJ459383
Dated: 2002-12-19 | Length: 2750 | CRC: 1364169072
!!NA_SEQUENCE 1.0
ID BSN459383 standard; RNA; VRL; 2750 BP.
XX
AC AJ459383;
XX
SV AJ459383.1
XX
DT 19-DEC-2002 (Rel. 74, Created)
DT 19-DEC-2002 (Rel. 74, Last updated, Version 1)
XX
DE Channa lucius virus VP1 gene for RNA-dependent RNA polymerase, genomic RNA
XX
KW RNA-dependent RNA polymerase; VP1 gene.
XX
OS Channa lucius virus
OC Viruses; dsRNA viruses; Birnaviridae; Avibirnavirus.
XX
RN [1]
RP 1-2750
RA Delmas B.;
RT ;
RL Submitted (30-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL Delmas B., Sante Animale, Institut National Recherche Agronomique, Unite
RL VIM, Batiment de Biotechnologies, INRA, 78350 Jouy-en-Josas, FRANCE.
XX
RN [2]
RA Da Costa B., Soignier S., Chevalier C., Henry C., Thory C., Huet J.C.,
RA Delmas B.;
RT "Blotched snakehead virus is a new aquatic birnavirus that is slightly more
RT related to avibirnavirus than to aquabirnavirus";
RL J. Virol. 77(1):719-725(2003).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2750
FT /country="Viet Nam"
FT /db_xref="taxon:194515"
FT /note="segment B"
FT /virion
FT /organism="Channa lucius virus"
FT /specific_host="Blotched Snakehead fish"
FT CDS 99. .2702
FT /transl_table=1
FT /product="RNA-dependent RNA polymerase"
FT /gene="VP1"
FT /protein_id="CAD30691.1"
FT /translation="MSDVFNTPHARRTITQALGLTNVSDRTQDWLLPEPWNPPMDPIKN
FT SQEAAEYLQRNQYRMLKPRAIPENTPLDTSELFPHLAEFVGSGAFGTSTLVPAGSTEYI
FT PRYYPTHKPEHNKPTPFGHYDVALLKQMTYQLTNGKDNPEEEGTTFRQFRDTIVEQQYG
FT SGTSQGQLARLVAMKEVATGRNPNKSPKELGLSMEEIATMLEQTLPIGQPGGDEGWPSL
FT TTTLSELLNPAEGMDYLPHITMKSSSGLPFIGKTKGETVTSALAICDTFLREVSECVKE
FT GAMASDNQKLQKLLQDYWYLSCGLLFPKAERYEKKAWLTKTRNIWSAPFPTHLLLSTIS
FT WPIMNSSKNNILNVPECVSLYGFNPFSGGMDAVVTNILAQPDETLFLIYADNIYIYMDR
FT TWFSIDLEKGEANATPEHAQAVSYYLLTRGWTQDDGSPAFNATWATIAMMIAPSLVVDS
FT SCLFMNLQLKTYGQGSGNAWTFLINHTLSTILVGKWIEAGQPNPRSKEFMDLEAATGIN
FT FKIEREIEGLPTRLQEAMDKAVHTGFLGDGTTNPPEKEGPTVDLDLLGWSATYSRHMDM
FT WVPVLDKERLLSSAAYPKGLENKDLKGKPGAEIAYKIVRNEALLMVGGWNYPLIARSLM
FT ANTSAARNNLRQKGVPLDTLTRDWEKMTEFSDIFEDLPIDTKLEVTSEFLQRLNLRGER
FT KQPNVNKHHLRTKGLKKCVSALKQGACRNPTTVAGLKLTAYSKSRINKAKAVFDEINNL
FT PKTESDDWSDRMDDADRLMKANNLYMREARSALEDVHNSLLALSGETVKAKTPQEKSTE
FT KVSNPVVGYRLPAERATGVQHALLGVGVSRPSEGALTKNARKMKKRREKARGINH"
XX
SQ Sequence 2750 BP; 857 A; 758 C; 688 G; 447 T; 0 other;
AJ459383 Length: 2750 January 14, 2003 16:43 Type: N Check: 7686 ..
1 ggaaagtgtg ggtcgactcc ccgtgacaat cggcacaggg accactctgc
51 agtgccggct gtcccggcta ctttaaaccc ccaaataata gattgaagat
101 gagtgacgta ttcaacacac cacatgctag gagaacaata acccaagcac
151 ttggtttgac gaacgtatcg gacagaacac aggactggct actaccagaa
201 ccatggaacc cgcctatgga tcccatcaag aacagccaag aggctgcgga
251 gtacctacag cggaaccagt acaggatgct aaagccccgg gcaatacccg
301 aaaacacacc cctagacact tcagagctgt ttccacactt ggcagagttc
351 gtaggatcag gggcatttgg cacctcgaca ctggtcccgg ctgggagcac
401 tgagtacatc ccacgatact accccacaca caagcccgag cacaacaaac
451 caacaccctt cgggcactac gacgtggcac ttctcaaaca gatgacttac
501 caacttacaa atggaaaaga caacccagaa gaggagggca ccacgtttag
551 gcagttcagg gacaccatag tggaacaaca atacgggtcc ggaaccagtc
601 aggggcaact agccaggcta gtcgccatga aggaagtagc aacagggagg
651 aaccccaaca agtcccccaa agaactaggg ctctcaatgg aggagattgc
701 aactatgcta gagcaaactc tgcccattgg acagcccggg ggggacgaag
751 ggtggccatc cctgacaaca accctcagcg agctcctgaa cccagctgag
801 ggaatggact acctcccgca cattacaatg aagtcatcat caggactccc
851 cttcattgga aaaaccaagg gagagacagt gacatctgca ctggccatct
901 gtgacacatt cctaagagag gtctcggagt gtgtcaaaga gggagctatg
951 gccagcgaca accagaaact acagaagctc ctacaagact actggtacct
1001 ctcctgcggg ctattattcc cgaaggccga gaggtacgag aagaaggcct
1051 ggctgaccaa aacaaggaac atctggtcag cccccttccc aacccacctt
1101 ctgctctcca cgataagctg gcccataatg aactcatcaa agaataacat
1151 cctaaatgtg ccagaatgcg tgtccctata cgggttcaac ccattctcag
1201 gcggaatgga cgccgttgtg acgaacatac tggcacaacc agatgagacg
1251 ctttttctaa tctatgctga caacatttac atctacatgg ataggacatg
1301 gttcagcata gacctagaaa aaggagaagc caacgcaaca ccagaacacg
1351 cccaggcagt gtcctactac ctattgacca gaggctggac tcaagacgat
1401 gggtccccag ccttcaatgc cacctgggca accatagcaa tgatgattgc
1451 gccctccctg gtagtggact caagctgcct gttcatgaac ctgcaactaa
1501 agacatacgg gcaaggaagt ggaaatgcat ggacatttct gatcaaccac
1551 acactctcaa ccattcttgt tgggaagtgg attgaggctg gtcaaccaaa
1601 cccaaggtca aaagagttca tggacctaga agccgcaact ggcatcaact
1651 ttaaaataga gagagagatc gagggcctgc caaccagact acaggaggcg
1701 atggacaagg cagtgcacac aggcttccta ggcgacggga ccacgaaccc
1751 cccagagaaa gaagggccca cagtggacct cgacctactg gggtggtccg
1801 ccacgtactc gcgtcacatg gacatgtggg tcccagtcct ggacaaagag
1851 aggctcctga gctcagcagc ctaccccaag ggacttgaga acaaagacct
1901 aaaaggaaag cccggggccg agatagccta caaaatagtc agaaacgaag
1951 cactgctgat ggttgggggc tggaactatc ctctgatagc ccgctcacta
2001 atggccaaca cgagcgcagc aagaaacaac ctcagacaaa agggggtgcc
2051 tctggacact ctgacaagag actgggaaaa gatgacggaa ttctcagaca
2101 tcttcgaaga cctaccaata gataccaaac tagaggtgac atcagagttc
2151 ctacagaggc taaatctacg aggagagcgg aaacaaccaa acgtcaacaa
2201 gcaccacctt agaacaaagg ggctaaagaa atgcgtctca gctctgaaac
2251 aaggcgcctg caggaaccca acgacggtgg cggggctaaa gctgacggcc
2301 tactccaaat caaggattaa caaagccaag gccgtatttg acgaaataaa
2351 caacctacca aaaaccgagt cagatgactg gtctgacagg atggacgacg
2401 cagacagact catgaaggcc aacaacctgt acatgaggga agcccggtct
2451 gcactggaag acgtccacaa ctccctacta gccctgtcgg gagaaacagt
2501 gaaagccaag acaccgcaag agaaaagcac cgaaaaggtc tccaacccgg
2551 tggtcgggta ccgcctacca gcggagcgtg caactggcgt tcagcacgct
2601 ctccttggag taggagtatc aagaccatcg gaaggggcac tcacaaagaa
2651 cgcgcgtaag atgaagaaga ggagggaaaa agcgcgggga atcaatcact
2701 aacgtagcca ccaagtcgac ccacttcctg attccggaca gcaggtccca