Sequence of DPV Lettuce mosaic virus

Lettuce mosaic virus partial gene for polyprotein, genomic RNA

ACC No: AJ488153

Dated: 2003-05-23 | Length: 1688 | CRC: 1875388741

                !!NA_SEQUENCE 1.0
ID   LMO488153  standard; RNA; VRL; 1688 BP.
XX
AC   AJ488153;
XX
SV   AJ488153.1
XX
DT   23-MAY-2003 (Rel. 75, Created)
DT   23-MAY-2003 (Rel. 75, Last updated, Version 1)
XX
DE   Lettuce mosaic virus partial gene for polyprotein, genomic RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Lettuce mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1688
RA   Adams M.J.;
RT   ;
RL   Submitted (23-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J., Adams M.J.;
RT   "Characterization of potyviruses from vegetables in China";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1688
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12202"
FT                   /virion
FT                   /organism="Lettuce mosaic virus"
FT                   /isolate="HZ"
FT                   /specific_host="Lactuca sativa"
FT   CDS             <1. .1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAD32466.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAMTYTLHKLGFEDEEQDSMCKYFVNG
FT                   DDLIIAIKPEHESLLDQFQHCFKSLGLNYDFNSRTRKKEELWFMSHCGIKKDGIFIPKL
FT                   EPERIVSILEWDRSDQPVHRLEAICAAMIESWGYDKLTHEIRKFYKWCLEQAPYADLAK
FT                   AGKAPYIAECALKRLYTSKEASEAELEKYMEAIRSLANDEDDDDVDEVYHQVDAKLDAG
FT                   QGSKTDNKQKNSADPKDNIITEKGSSSGQVKKDDDINAGLHGKHTIPRTKAITQKMKLP
FT                   MIRGKVALNLDHLLEYEPNQRDISNTRATQKQYESWYDGVKNDYDVDDSGMKLILNGLM
FT                   VWCIENGTSPNINGTWVMMDGEEQVEYALKPIIEHAKPTFRQIMAHFSDAAEAYIEMRN
FT                   KKKPYMPRYGRLRGLNDMGLARYAFDFYETTSATPNRAREAHNQMKAAALVGTQNRLFG
FT                   MDGGGSTQEENTERHTAADVNQNMHTLLGVRGLH"
FT   mat_peptide     <1. .642
FT                   /product="NIb protein"
FT   mat_peptide     643. .1476
FT                   /product="coat protein"
FT   3'UTR           1480. .1688
XX
SQ   Sequence 1688 BP; 543 A; 334 C; 428 G; 383 T; 0 other;

  AJ488153  Length: 1688  May 28, 2003 14:34  Type: N  Check: 7455  ..

       1  ggaaataata gtggtcagcc ctccacggta gtagacaaca cattgatggt
      51  tgtattagct atgacataca cgctgcacaa gttaggcttt gaggatgagg
     101  aacaagactc aatgtgcaag tacttcgtca atggagacga cctgatcatc
     151  gcgataaaac cagaacacga atcattactg gatcagttcc aacattgttt
     201  caaaagtttg ggcctaaatt acgacttcaa ctcacgaacg aggaagaagg
     251  aggaattgtg gttcatgtca cattgcggca tcaagaaaga cggaatcttc
     301  atcccaaaac tcgaaccaga gcgcattgtg tcaatcctag agtgggatag
     351  gtcagaccag ccagtgcatc gcttagaggc catatgtgca gcaatgattg
     401  aatcatgggg ttacgacaaa ttaacccatg aaattcgaaa attctacaag
     451  tggtgcctgg aacaagcacc atatgctgat ttggcgaaag caggaaaagc
     501  accgtacata gcagagtgtg ctcttaaacg attgtacacc agcaaggaag
     551  ccagtgaagc ggaattagaa aaatacatgg aagctatacg tagtctcgcc
     601  aatgatgaag atgatgacga tgtggatgag gtctatcatc aagtagacgc
     651  gaagcttgat gcaggccaag gcagcaaaac tgataataag cagaagaact
     701  cagcggatcc aaaggataat atcatcacag agaaaggaag tagttctggg
     751  caggtgaaga aggatgacga catcaacgca gggctacatg gtaaacacac
     801  catacctcgt acaaaggcaa tcacacagaa aatgaagtta ccaatgatcc
     851  gaggtaaagt ggctttgaac cttgatcatt tgctggagta cgaaccaaac
     901  cagagagaca tatcaaacac acgtgcaacc cagaaacagt acgaatcatg
     951  gtatgacggg gttaagaatg actatgatgt ggatgatagt ggcatgaaat
    1001  taattctgaa cggattgatg gtttggtgta tagaaaacgg gacatccccg
    1051  aatataaatg gaacatgggt gatgatggat ggtgaagaac aagtagaata
    1101  tgctctgaaa cccatcatcg aacacgcaaa acccacgttt cgccagataa
    1151  tggcccactt cagtgacgca gccgaggcgt acattgagat gagaaacaag
    1201  aagaaaccgt atatgccacg atacggacgg ctacgaggct tgaacgatat
    1251  ggggctggct cgctatgctt tcgacttcta cgaaacaaca tcagcgaccc
    1301  caaatcgggc gagagaggcg cacaatcaaa tgaaggcagc tgctctagtg
    1351  ggaacacaga acagactgtt tggaatggat ggaggcggtt caacccagga
    1401  agagaacacg gagaggcaca cagccgcaga tgttaatcag aatatgcata
    1451  ctctcttagg cgtgagaggg ttgcactaaa ggcgtgtgtt ggcatttaaa
    1501  gattgtagta taaatctata atatagtgag tgtttcactc cttttatgtt
    1551  tatgtatgca cttatttgtc cgttagtatt ctctccctgt acttcgctcg
    1601  tgagggcgta ggttcagctg agggcttttc tagtttccgc tgtgaggttt
    1651  tacctcgaag gttgctagtc tggttttcag tcggagac