Sequence of DPV Tobacco leaf rugose virus
Tobacco leaf rugose virus DNA-A, complete sequence
ACC No: AJ488768
Dated: 2010-08-26 | Length: 2622 | CRC: 571120244
ID AJ488768; SV 2; linear; genomic DNA; STD; VRL; 2622 BP.
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AC AJ488768;
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DT 03-JUN-2002 (Rel. 72, Created)
DT 26-AUG-2010 (Rel. 105, Last updated, Version 5)
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DE Tobacco leaf rugose virus DNA-A, complete sequence
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KW .
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OS Tobacco leaf rugose virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RC revised by [3]
RA Ramos P.L.;
RT ;
RL Submitted (28-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL Ramos P.L., Dpto. de Plantas, Ctro Ingenieria Genetica y Biotecnologia, Ave
RL 31 e/ 158 y 190, Playa, Apdo Postal 6162, CP 10600, La Habana, CUBA.
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RN [2]
RA Dominguez M., Ramos P.L., Echemendia A.L., Peral R., Crespo J., Andino V.,
RA Pujol M., Borroto C.;
RT "Molecular Characterization of Tobacco leaf rugose virus, a New Begomovirus
RT Infecting Tobacco in Cuba";
RL Plant Dis. 86(9):1050-1050(2002).
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RN [3]
RP 1-2622
RA Ramos P.L.;
RT ;
RL Submitted (30-MAY-2008) to the EMBL/GenBank/DDBJ databases.
RL Ramos P.L., Dpto. de Plantas, Ctro Ingenieria Genetica y Biotecnologia, Ave
RL 31 e/ 158 y 190, Playa, Apdo Postal 6162, CP 10600, La Habana, CUBA.
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FH Key Location/Qualifiers
FH
FT source 1. .2622
FT /organism="Tobacco leaf rugose virus"
FT /segment="DNA-A"
FT /host="Nicotiana tabacum"
FT /mol_type="genomic DNA"
FT /country="Cuba:Havana"
FT /db_xref="taxon:196691"
FT CDS 197. .952
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:Q8JJV0"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q8JJV0"
FT /protein_id="CAD32807.1"
FT /translation="MVKRDAPWRSMAGPSKVSRNANYSPRGVSGPRVNKAQAWVNRPMY
FT RKPMIYRMLRGPDIPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSIMN"
FT CDS complement(949. .1347)
FT /gene="AC3"
FT /product="replication enhancement protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B3CJ48"
FT /protein_id="CAQ57898.1"
FT /translation="MDSRTGELITAHQAENGVYIWEIENPLYFRMYRVEDPLYTRTRVY
FT HIQIRFSHNLRRALDLHKAYMNFQVWTTSLTASGQTYLARFRHLVNLYLDQLGVISVNN
FT VIRAVRFATDRTYVNYVLENHSIKFKIY"
FT CDS complement(1094. .1486)
FT /gene="AC2"
FT /product="transactivator protein"
FT /db_xref="GOA:B3CJ49"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B3CJ49"
FT /protein_id="CAQ57899.1"
FT /translation="MRSSSPSQPPSIKKAHRQYKKRRAIRRRRIDLQCGCSIYFHIGCT
FT GHGFTHRGTHHCTSGGEWRVYLGDRKSPLFQDVQGRGPAVHQDQSIPHPDTVQPQPEES
FT VGSPQGVHELPSLDDFPDSFWADIFS"
FT CDS complement(1395. .2480)
FT /gene="AC1"
FT /product="replication associated protein"
FT /db_xref="GOA:Q8JJV1"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:Q8JJV1"
FT /protein_id="CAD32806.1"
FT /translation="MPSVKRFKSQPKTNFITYPQCSLPKEEALSQLQNLETPVNKKFIK
FT ICRELHENGEPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGKQSANDSYAKALNADSVQSAMAVLREEQPKDFVLQNH
FT NIRSNLERIFAKAPEQWVPPFQLSSFTNVPEDMQEWADDYFGRGSARPERPLSIIVEGD
FT SRTGKTMWARSLGPHNYLSGHLDFNARVYSNEVDYNVIDDVAPHYLKLKHWKELLGAQK
FT DWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLRNWTIKNAVFITLTA
FT PLYQEGAQTIQEKEGNQETQD"
FT CDS complement(2066. .2329)
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:B3CJ50"
FT /protein_id="CAQ57900.1"
FT /translation="MRMGSLISMCLYSSRENTSARITDSSIWSPQPGQHISIRTYRELN
FT PAPTSSPTSTRTEIHWNGENSRSTADLLEEASSLLMIHMPRR"
XX
SQ Sequence 2622 BP; 620 A; 607 C; 636 G; 759 T; 0 other;
aj488768 Length: 2622 26-AUG-2010 Type: N Check: 700 ..
1 accggatggc cgcgcgcccc ccttggtgcc gtactccttt ggtgcgcttg
51 tggacccaca cctaataatg acaattttgt atcgtccaat catattgcgt
101 gtgacgagct tagttatctg tgccaacttc ttcgggacca agttaagagt
151 gtgggtctat aaaagaattt gaattggcgt tgttctttat gtcagaatgg
201 ttaagcggga cgctccttgg cgctcgatgg cgggtccctc caaggttagt
251 cgcaacgcca attactcccc tcgtggagtt tcgggcccaa gagtgaacaa
301 ggcccaagct tgggtgaaca ggcccatgta taggaagccc atgatctacc
351 ggatgttgag aggccccgat attcctaagg gctgtgaagg tccttgtaag
401 gtccaatctt atgagcagcg acatgacatc tcccatgtcg gcaaggtcat
451 gtgcatatcc gatgtgacgc gtggtaatgg tattacccat cgtgtgggta
501 agcgtttttg tgttaagtct gtgtatatct taggtaagat atggatggac
551 gaaaacatca agttgaagaa ccacacgaac agcgtcatgt tctggttggt
601 cagggaccgt agaccctatg gcacccctat ggactttggc caggtgttta
651 acatgttcga caacgagcct agcacggcta ccgtgaagaa cgatctccgc
701 gatcgttacc aggtcatgca caggttctat gccaaagtca caggtggaca
751 gtacgccagc aacgagcagg cattggttag gcgattctgg aaggtgaaca
801 accacgtggt ctacaaccac caggaagctg gcaagtacga gaaccacacc
851 gagaacgccc ttttattgta tatggcatgt actcatgcgt ctaaccctgt
901 gtatgcaact ctgaagattc ggatctattt ttacgattcg atcatgaatt
951 aataaatttt gaattttatt gaatgatttt ccagtacata atttacatac
1001 gttctgtccg tcgcgaatcg tacagctcta attacattgt taactgaaat
1051 cacgcctaac tgatctaaat acaagttgac taagtgccta aacctagcta
1101 aatatgtctg cccagaagct gtcagggaag tcgtccagac ttggaagttc
1151 atgtacgcct tgtggagatc caacgctctc ctcaggttgt ggctgaaccg
1201 tatctggatg tggtatactc tggtcctggt gtacagcggg tcctctaccc
1251 tgtacatcct gaaatagagg ggattttcta tctcccagat atacacgcca
1301 ttctccgcct gatgtgcagt gatgagttcc cctgtgcgtg aatccatgcc
1351 cggtacagcc tatgtggaag tagatggagc acccgcactg taaatcaatc
1401 ctgcgtctcc tgattgccct ccttttcttg tattgtctgt gcgccttctt
1451 gatagagggg ggctgtgagg gtgatgaaga ccgcattctt gatggtccag
1501 tttctgagtg atgcgttttc ctctttgtcg aggaaatctt tatagctggc
1551 accctcacca ggattgcaaa gcacgattga tgggattcct cctttaattt
1601 gaactggctt gccgtatttg caatttgact gccagtcctt ctgggccccc
1651 agaagttctt tccagtgctt tagctttaga tagtgcggtg cgacgtcatc
1701 aatgacgtta taatccactt cgtttgaata gacccgggca ttgaagtcca
1751 ggtgtccact gagatagtta tgcgggccca atgaacgagc ccacatggtc
1801 tttcccgtcc ttgaatcacc ttcaactatg atactcagtg gtctttctgg
1851 ccgcgcagaa cctcttccaa aataatcatc cgcccactct tgcatgtctt
1901 ccggaacgtt agtgaacgag gagagttgaa acggaggaac ccattgttct
1951 ggagcctttg cgaatatcct ttctaagttg gagcggatgt tatgattctg
2001 caggacaaaa tcttttggct gttcttccct taaaaccgcc atggcagact
2051 gaacagagtc tgcatttaac gccttggcat atgaatcatt agcagactgc
2101 ttgcctcctc tagcagatct gccgtcgatc tggaattctc cccattccag
2151 tgtatctccg tccttgtcga tgtaggactt gacgtcggag ctggatttag
2201 ctccctgtat gttcggatgg aaatgtgctg acctggttgg ggagaccaga
2251 tcgaagaatc tgttattctt gcactggtat tttccctcga actgtataag
2301 cacatggaga tgaggctccc cattctcatg cagttctctg cagattttga
2351 tgaacttctt gttaactggt gtttctaggt tttgtaattg ggaaagtgcc
2401 tcttcttttg gaagagagca ctgcggataa gtgatgaaat tagtttttgg
2451 ctgagatttg aaacgcttga ctgatggcat tttttgtaat aagaagggag
2501 accccaattg agctctctct aaacttgcta tatgaattgg ggtctggggt
2551 ctcatttata ctagaaggct caatagaact ctcaatctcg ttcgcacacg
2601 tgcggccatc cgatataata tt