Sequence of DPV Turnip mosaic virus

Turnip Mosaic Virus partial gene for partial polyprotein, genomic RNA

ACC No: AJ489259

Dated: 2003-09-22 | Length: 1708 | CRC: 1104281566

                !!NA_SEQUENCE 1.0
ID   TMO489259  standard; genomic RNA; VRL; 1708 BP.
XX
AC   AJ489259;
XX
SV   AJ489259.2
XX
DT   06-AUG-2002 (Rel. 72, Created)
DT   22-SEP-2003 (Rel. 77, Last updated, Version 3)
XX
DE   Turnip Mosaic Virus partial gene for partial polyprotein, genomic RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RC   revised by [3]
RA   Segundo E.;
RT   ;
RL   Submitted (05-JUN-2002) to the EMBL/GenBank/DDBJ databases.
RL   Segundo E., Unidad de Virologia, CIFA Almeria, El Ejido PO Box 91, Almeria
RL   E-04700, SPAIN.
XX
RN   [2]
RA   Segundo E., Martin-Bretones G., Velasco L., Ruiz L., Janssen D.,
RA   Cuadrado I.M.;
RT   "First Report of Turnip Mosaic Virus infecting pea in Spain";
RL   Plant Dis. 87:103-103(2003).
XX
RN   [3]
RP   1-1708
RA   Segundo E.;
RT   ;
RL   Submitted (09-AUG-2002) to the EMBL/GenBank/DDBJ databases.
RL   Segundo E., Unidad de Virologia, CIFA Almeria, El Ejido PO Box 91, Almeria
RL   E-04700, SPAIN.
XX
DR   GOA; Q8JJU9.
DR   SPTREMBL; Q8JJU9; Q8JJU9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1708
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /strain="SP1"
FT   CDS             <1. .1500
FT                   /db_xref="GOA:Q8JJU9"
FT                   /db_xref="SPTREMBL:Q8JJU9"
FT                   /product="polyprotein"
FT                   /protein_id="CAD33245.2"
FT                   /translation="GNNSGQPSTVVDNTLMVILAVNYSLKKSGIPHELRDGIIKFFVNG
FT                   DDLLLSVHPQYEFVLDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKL
FT                   EPERIVSILEWDRSKEPCHHLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQ
FT                   EGKAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDYEDDVEVCVYHQANETLDAGLTE
FT                   EQKQAEKERKEKEKAEKEREKQKQLALKKGKDVEKEEGKRDREVNAGTSGTFSVPRLKS
FT                   LTSKMRVPKYDQRVALNLDHLILYTPEQTDLSNTRSTQKQFDTWFEGVMADYELTEDKM
FT                   QIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVA
FT                   EAYIEKRNQGRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALR
FT                   GANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .633
FT                   /product="NIb protein"
FT   mat_peptide     634. .1497
FT                   /product="coat protein"
FT   3'UTR           1501. .1708
XX
SQ   Sequence 1708 BP; 542 A; 336 C; 425 G; 405 T; 0 other;

AJ489259  Length: 1708  September 30, 2003 08:38  Type: N  Check: 5875  ..

       1  gggaataaca gtggacagcc atcaacagtc gtagacaaca cgcttatggt
      51  catattggcg gttaattact cactcaagaa aagtgggatt ccacacgaac
     101  tacgcgatgg tattatcaaa ttcttcgtca atggagatga tttactgttg
     151  agcgtacacc cacaatacga gttcgtcctt gacaccatgg cggataattt
     201  ccgagagttg ggactgaaat acaccttcga ctcacgaact agagagaaag
     251  gagatctttg gttcatgtct catcaaggtc acaaacgaga aggaatttgg
     301  attcctaagc tggaaccgga gcgaatagtg tcgatccttg aatgggaccg
     351  atcaaaagag ccatgccacc acttagaagc tatctgtgca gcaatgattg
     401  agtcttgggg ttatgataaa ctcacccacg aaatacgcaa gttctacgca
     451  tggatgattg aacaggctcc attcagctcg ttagcacagg aaggaaaggc
     501  tccttatata gcagagacag cactgaggaa gctgtacctt gacaaagaac
     551  cggctcaaga agatttaact cactacttac aagcgatctt cgaagattac
     601  gaggatgatg tcgaagtttg tgtgtaccat caagcaaacg aaacacttga
     651  tgctggttta acagaggagc aaaaacaagc agagaaagag aggaaagaga
     701  aggagaaggc agaaaaagag cgagaaaagc aaaaacagct agcgcttaag
     751  aaaggcaaag atgtcgagaa agaggaagga aaacgcgaca gagaagtgaa
     801  cgctggcact tcaggaactt ttagtgtacc taggctcaag agtctaacta
     851  gcaaaatgcg tgtgccaaag tatgatcaga gagtggctct taatcttgac
     901  catctaatcc tttacacgcc agagcaaaca gacttatcca acacgcgttc
     951  aacgcagaag cagttcgata catggtttga aggggttatg gccgattacg
    1001  aactgacgga ggacaaaatg caaatcattc tcaacggttt aatggtctgg
    1051  tgcattgaga atggaacttc cccgaacata aacggaatgt gggtgatgat
    1101  ggacggtgac gatcaggtgg aatttccgat caagccgctc attgaccacg
    1151  ccaaacccac atttaggcaa ataatggccc atttcagtga cgtagctgaa
    1201  gcgtacattg aaaagcgtaa ccaaggccgg ccatacatgc cacgatatgg
    1251  tcttcagcgc aatttaaccg acatgagctt agctcgttac gcatttgatt
    1301  tctatgaaat gacttctaga actccgatac gtgcgagaga ggcacacatc
    1351  cagatgaaag cagcagcact gcgtggcgca aataacaatt tgttcggatt
    1401  ggatggtaac gttggtacaa cggtagagaa cacggagaga cacacaaccg
    1451  aggacgtgaa tcggaacatg cataacttgc ttggcgtaaa ggggttatga
    1501  agttgtgtgt tggtagacta taagtattta agtttactcg ttagtattct
    1551  cgcttatggg aaatatgtaa gtttgttaaa gcagccagtg tgactttgtc
    1601  acgtgtgttg ttgttacttt caatattttc gccgaacatt ttattggtgt
    1651  tagcgcatgt ggtgaggatc ttcctcgatt gccttaacat ttgataggat
    1701  gcaaggga