Sequence of DPV Narcissus late season yellows virus

Narcissus late season yellow virus partial gene for polyprotein, genomic RNA

ACC No: AJ493579

Dated: 2003-02-10 | Length: 1668 | CRC: 65520110

                !!NA_SEQUENCE 1.0
ID   NLA493579  standard; RNA; VRL; 1668 BP.
XX
AC   AJ493579;
XX
SV   AJ493579.1
XX
DT   10-FEB-2003 (Rel. 74, Created)
DT   10-FEB-2003 (Rel. 74, Last updated, Version 1)
XX
DE   Narcissus late season yellow virus partial gene for polyprotein, genomic
DE   RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Narcissus late season yellow virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1668
RA   Adams M.J.;
RT   ;
RL   Submitted (08-JUL-2002) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J., Langeveld S.A., Derks A.F.L.M., Adams M.J.;
RT   "Molecular characterization of carla- and potyviruses from Narcissus in
RT   China";
RL   J. Phytopathol. 151:26-29(2003).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1668
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:160842"
FT                   /virion
FT                   /organism="Narcissus late season yellow virus"
FT                   /isolate="Hangzhou 2"
FT                   /specific_host="Narcissus"
FT   CDS             <1. .1458
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /protein_id="CAD38487.1"
FT                   /translation="GNNSGQPSTAVDNTLMVILAMRYSLLKAGVLVEQHDEMCRFLVNG
FT                   DDLLLALAPEFEFILDDLASSFSELGLKYTFDQRTREKGDLWFMSHKGIKREGIWIPKL
FT                   EPERVVSILEWDRSKEPAHRLEAICAAMIESWGYDELTREIRKFYTWLLSQAPYSGLAQ
FT                   EGKAPYIAETALRKLYLNKDAEQSDIMRYMEAILEDFDDKTPLEVYHQSGKQTLDAGAE
FT                   EERNNSKSKEKKTTDESGGRPPPMGKDKDVNVGVSGSFPVPRLKMITHKLTLPLYNRRI
FT                   ALNLDHLITYTPRQVDLSNTRATQRQFDTWYEGVMADYDVDEAKMAIILNGFMVWCIEN
FT                   GTSPNINGVWVMMDGEEQVEFPLKPIIEHAKPTLRQIMAHFSNGAEAYIEMRNYQQPYM
FT                   PRYGLQRNLTDMSLARFAFDFYEMTSKTPIRAREAHLQMKAAALRGTQNHLFGLDGNVG
FT                   TTEENTERHTTDDVNRNMHSLLGVRGV"
FT   mat_peptide     <1. .633
FT                   /product="NIb protein"
FT   mat_peptide     634. .1455
FT                   /product="coat protein"
FT   3'UTR           1459. .1668
XX
SQ   Sequence 1668 BP; 531 A; 326 C; 403 G; 408 T; 0 other;

AJ493579  Length: 1668  February 19, 2003 09:05  Type: N  Check: 7619  ..

       1  gggaacaata gcgggcaacc ttcaactgca gtcgataaca cgttaatggt
      51  catcctagca atgcgatact cattgttgaa ggcaggagtg ctcgtagagc
     101  agcatgacga aatgtgtaga tttcttgtca atggagacga ccttctttta
     151  gccttagcac cagagttcga atttatactt gatgatttag ccagcagttt
     201  ttcagaactt gggctaaagt atacttttga tcagcgaacg cgggagaaag
     251  gcgatttatg gttcatgtca cacaagggaa tcaagcgtga aggcatttgg
     301  attccgaaac tcgagcctga acgcgtggtc tcaattctag aatgggatag
     351  gtcaaaagaa ccagcacaca ggttggaggc tatatgcgct gcgatgattg
     401  aatcatgggg ttatgatgag ttaacacgtg aaatacgaaa gttttacact
     451  tggcttctat ctcaagcacc ttacagtggt ttggctcagg agggaaaagc
     501  accatatatt gctgagacgg ctcttaggaa gttatactta aataaagacg
     551  ccgagcaaag tgacattatg cgttacatgg aagcaatctt ggaagatttt
     601  gacgataaaa caccacttga agtctatcac caatcaggca agcaaacttt
     651  ggatgctggt gctgaggaag aacgaaacaa ctccaagagc aaagagaaga
     701  aaacaactga cgaatcaggt gggagacctc cacccatggg caaagacaaa
     751  gatgtgaacg ttggtgtcag tggcagtttc ccagtgccac gactgaaaat
     801  gataacacac aagttgacat taccattgta caacagacgc atagccctta
     851  atctagacca tcttatcaca tacacaccac gacaagtgga cttatcgaac
     901  acaagggcca cacaaaggca gtttgacaca tggtacgaag gggttatggc
     951  ggactatgat gtcgatgaag cgaagatggc aattatactt aatggattta
    1001  tggtgtggtg tattgagaat ggaacatcac caaatattaa tggagtgtgg
    1051  gttatgatgg atggagagga acaggttgaa tttcctctga aaccaatcat
    1101  tgaacacgcc aaaccaacac tcaggcaaat aatggcccat ttcagtaacg
    1151  gtgctgaagc gtatattgag atgagaaact accaacaacc gtacatgcca
    1201  cggtacggcc tgcagcgaaa tttaaccgac atgagcctgg cccgcttcgc
    1251  ttttgatttc tatgaaatga cttcaaaaac accaatccga gcgcgagaag
    1301  cacacttgca aatgaaagca gcagctcttc ggggcacgca gaatcacttg
    1351  ttcggcttgg atggaaatgt tggtacgaca gaagagaaca cggagagaca
    1401  caccaccgat gatgtaaata ggaatatgca tagcctttta ggcgtaaggg
    1451  gcgtgtagta ttgtgtgttg gtatttatag caaaatatat aaatactcgt
    1501  tagtattctc aactatagag aaatattatc acacaaggat gctagtttgg
    1551  cgctgccaag aatgtaatct tgtgtctata tatatttcga tcgaaaacgg
    1601  cggatttgct gaagaatcag tgagagcttc tctccaacag tcttcaccaa
    1651  gtttggtgtt ctagagac