Sequence of DPV Ornithogalum mosaic virus

Ornithogalum mosaic virus partial gene for polyprotein, genomic RNA

ACC No: AJ493580

Dated: 2003-02-10 | Length: 1667 | CRC: 200306373

                !!NA_SEQUENCE 1.0
ID   OMO493580  standard; RNA; VRL; 1667 BP.
XX
AC   AJ493580;
XX
SV   AJ493580.1
XX
DT   10-FEB-2003 (Rel. 74, Created)
DT   10-FEB-2003 (Rel. 74, Last updated, Version 1)
XX
DE   Ornithogalum mosaic virus partial gene for polyprotein, genomic RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Ornithogalum mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1667
RA   Adams M.J.;
RT   ;
RL   Submitted (08-JUL-2002) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J., Langeveld S.A., Derks A.F.L.M., Adams M.J.;
RT   "Molecular characterization of carla- and potyviruses from Narcissus in
RT   China";
RL   J. Phytopathol. 151:26-29(2003).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1667
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12204"
FT                   /virion
FT                   /organism="Ornithogalum mosaic virus"
FT                   /isolate="Hangzhou"
FT                   /specific_host="Narcissus"
FT   CDS             <1. .1398
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAD38488.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAMNYALAKLSIPYEEMESRIRYFANG
FT                   DDLLIAVEPTRGGEILDSLQASFSELGLNYDFNDRTFDKTQLSFMSHQALWDGDMYIPK
FT                   IKQERVVSILEWDRSVLPEHRIEAVCAAMIEAWGYPELLQEIRKFYAYMVTQEPYSAIH
FT                   AQGKTRYISERALVTLYKDEKVVLSDIEPYLQKLAEMSLDCFDEIVSHQAESMDAGGLS
FT                   RPPAPLVRQQDQDVNVGTFSVARVKALSDKMMLPKVRGRTVLNLQHLVQYNPEQVEISN
FT                   TRATRTQFNNWYDKVRDHYGVTDDQMTVILNGLMVWCIENGTSPNLNGNWTMMDGDEQV
FT                   EYPLQPILENAQPTFRQIMAHFSNAAEAYIEKRNSEQRYMPRYGSQRNLNDYSLARYAF
FT                   DFYELTSRTPNRAREAHIQMKAAALRNTKTKLFGLDGKVGTEEEDTERHVASDVNRNMH
FT                   SLLGVNM"
FT   mat_peptide     <1. .636
FT                   /product="NIb protein"
FT   mat_peptide     637. .1395
FT                   /product="coat protein"
FT   3'UTR           1399. .1667
XX
SQ   Sequence 1667 BP; 511 A; 315 C; 405 G; 436 T; 0 other;

AJ493580  Length: 1667  February 19, 2003 09:05  Type: N  Check: 9520  ..

       1  gggaataata gtgggcagcc ttcaactgtt gttgacaaca ctttaatggt
      51  cgtgttggct atgaactatg cattagcaaa actgtcaatt ccatatgagg
     101  aaatggagtc acggattcgc tactttgcaa atggtgacga ccttctgata
     151  gcggttgaac ccacacgagg gggcgaaatt cttgattcac ttcaagcatc
     201  attctctgaa ctgggactca actatgattt caacgacaga actttcgaca
     251  agacgcagct cagctttatg tctcaccagg ctttgtggga tggagacatg
     301  tacataccaa agatcaaaca ggagcgagtg gtgtcgattt tggaatggga
     351  cagaagcgtc ttaccagagc acagaattga agctgtatgt gcagctatga
     401  ttgaggcgtg gggttatcct gaactgcttc aggaaatacg aaagttctat
     451  gcgtatatgg ttacacagga accatatagt gcaatacatg ctcaaggcaa
     501  aactcgctac atttccgagc gagcactggt gacactctac aaggacgaaa
     551  aggtggtgtt gagcgacatt gaaccctacc ttcaaaagtt ggccgagatg
     601  agcttggatt gctttgatga aattgtttcg catcaagcag aatctatgga
     651  tgcaggagga ttaagcagac caccagcgcc gttggtgaga caacaagatc
     701  aagatgttaa cgttggaacg ttttctgttg cgcgagtgaa agcgttgagt
     751  gacaagatga tgttaccaaa ggtgcgcggt agaacagtgc tcaacttaca
     801  gcatttagta caatacaacc ctgagcaagt tgagatttca aacactcgcg
     851  ccacaagaac acagttcaat aactggtacg acaaggtgag agatcactat
     901  ggggttacag atgaccaaat gaccgtcatt ttaaatggct tgatggtgtg
     951  gtgtattgaa aatggcactt caccaaactt gaacggtaat tggacgatga
    1001  tggatggcga cgaacaagtc gaatatcctc ttcaaccaat ccttgagaat
    1051  gcgcagccaa cattcagaca gattatggcg catttctcaa acgcagccga
    1101  ggcgtacatc gaaaagagaa actcggaaca aaggtacatg ccaaggtacg
    1151  gcagccaacg aaatctgaac gactacagct tagcccgcta tgcatttgat
    1201  ttttatgaac tgacgtcccg aacgcctaac agggctaggg aagcacatat
    1251  acaaatgaaa gcagcagctc ttcgaaacac caaaacgaag ttgtttggtt
    1301  tggatgggaa agtgggtacc gaggaagagg acacagaacg gcatgttgca
    1351  agcgatgtta atcgtaacat gcattcacta cttggtgtta atatgtgatt
    1401  tagtgaaggt gagcttaatc tacacatgga ttagttcact ctgttagcat
    1451  cctttccttt gaattatgcg agatatcatt tatcttagtg accaacacag
    1501  tcaagtattg ggttgggtga taaggtaagt gaatattata gtgtgatttc
    1551  gaacttatta ttgttgtatt gtacttgtta gattaggtga ctgttctagt
    1601  ttgcaatgaa ttacaacagg tgactaatct agcatatatt ataatatttc
    1651  aatagtgtgt aagagac