Sequence of DPV Pelargonium flower break virus
Pelargonium flower break carmovirus complete genome
ACC No: AJ514833
Dated: 2004-06-11 | Length: 3923 | CRC: -1822743019
!!NA_SEQUENCE 1.0
ID PFL514833 standard; mRNA; VRL; 3923 BP.
XX
AC AJ514833;
XX
SV AJ514833.1
XX
DT 28-AUG-2003 (Rel. 77, Created)
DT 11-JUN-2004 (Rel. 80, Last updated, Version 2)
XX
DE Pelargonium flower break carmovirus complete genome
XX
KW coat protein; CP gene; p12 gene; p27 gene; p7 gene; p86 gene; p99 gene.
XX
OS Pelargonium flower break virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-3923
RA Hernandez C.;
RT ;
RL Submitted (25-OCT-2002) to the EMBL/GenBank/DDBJ databases.
RL Hernandez C., Inst. de Biologia Mol. y Cel. de Plantas, Csic, Avenida de
RL los Naranjos S/N, 46022 Valencia, SPAIN.
XX
RN [2]
RA Rico P., Hernadez C.;
RT "Complete nucleotide sequence and genome organization of Pelargonium flower
RT break virus";
RL Arch. Virol. 149:641-651(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3923
FT /country="Spain:Madrid"
FT /db_xref="taxon:35291"
FT /mol_type="mRNA"
FT /virion
FT /organism="Pelargonium flower break virus"
FT /isolate="MZ10"
FT /lab_host="Chenopodium quinoa"
FT /specific_host="Pelargonium zonale"
FT CDS 33. .2648
FT /note="read through stop codons"
FT /transl_except=(pos:762. .764,aa:OTHER)
FT /transl_except=(pos:2301. .2303,aa:OTHER)
FT /gene="p99"
FT /product="p99 protein"
FT /function="unknown"
FT /protein_id="CAD55834.1"
FT /translation="MLRFGSQLVVGSTLIGGLTAVGLAGLSVRATIGVVEFNLRCARVV
FT GDIIRDPFNALPSAPLFPGPSVEVFAEEVRKDLEPELEAKDYLVIHEEKEMDEEGKSKV
FT VRQRSTVNRHKKGRFVHRLVCDGKNHFGGTPSASRANELAVMKYLVGKCREHHLVVQHT
FT REVCSLAMAAIFTPDHHEVNMVREMNSHAAYRRRVALADASRVHSWQQELLRSPLSWNA
FT WGRAWWIANGLPDREPVRFTKXGGLFCLEGVETGVRRGTHPQMIEVEKNSPPKLRKLFA
FT QRLVSSGVEYRVHNHSFQNLRRGLLERVFYVEENKQLVSCPCPEKGAFKEMGYLRKQFV
FT RLTPKHARISAKEFVDCYHGRKKSVYEFAAMTLSERPLDRKDASLKTFIKAEKFCKADP
FT APRVIQPRSPRYNVELGRYLKKFEHTAYRTLDKIWGGKTVMKGYSVDEIGKHISEAWDS
FT FHSPVAVGFDMSRFDQHVSVPALQFEHSCYLACFPGDQHLAELLSWQLKNSGVGFASNG
FT MVRYKKDGCRMSGDMNTALGNCLLACLITRHLMKDINCRLVNNGDDCVLFLDKKDLPFV
FT VSNLTTGWRRFGFKCIAEEPVYELEHVRFCQMAPVYDGSQYVMLRDPFVSMSKDSFSLT
FT HWNTTKNAKQWMKSVGICGERITGGLPVVQEYYRKYQEIAGDVKFSHSLEITSSGTYRL
FT AQNSSRAYGSVSEMARFSFFLAFGVIPDAQIALEKHIRDMPVAAEFGPDESLADHTIEW
FT LLKXSFLIWVVIMRLTCQWEDVGTGVNRRVRYPSQRTLSPNGHLMVVMGVLGLLWLRPF
FT RSIYTSTFSMPPLINLQHILNLTLLSLILSSFILAERVTHNHYSNDNSKAQYIRISTGQ
FT "
FT CDS 33. .2303
FT /note="read through stop codon"
FT /transl_except=(pos:762. .764,aa:OTHER)
FT /gene="p86"
FT /product="p86 protein"
FT /function="putative RNA dependent RNA polymerase"
FT /protein_id="CAD55835.1"
FT /translation="MLRFGSQLVVGSTLIGGLTAVGLAGLSVRATIGVVEFNLRCARVV
FT GDIIRDPFNALPSAPLFPGPSVEVFAEEVRKDLEPELEAKDYLVIHEEKEMDEEGKSKV
FT VRQRSTVNRHKKGRFVHRLVCDGKNHFGGTPSASRANELAVMKYLVGKCREHHLVVQHT
FT REVCSLAMAAIFTPDHHEVNMVREMNSHAAYRRRVALADASRVHSWQQELLRSPLSWNA
FT WGRAWWIANGLPDREPVRFTKXGGLFCLEGVETGVRRGTHPQMIEVEKNSPPKLRKLFA
FT QRLVSSGVEYRVHNHSFQNLRRGLLERVFYVEENKQLVSCPCPEKGAFKEMGYLRKQFV
FT RLTPKHARISAKEFVDCYHGRKKSVYEFAAMTLSERPLDRKDASLKTFIKAEKFCKADP
FT APRVIQPRSPRYNVELGRYLKKFEHTAYRTLDKIWGGKTVMKGYSVDEIGKHISEAWDS
FT FHSPVAVGFDMSRFDQHVSVPALQFEHSCYLACFPGDQHLAELLSWQLKNSGVGFASNG
FT MVRYKKDGCRMSGDMNTALGNCLLACLITRHLMKDINCRLVNNGDDCVLFLDKKDLPFV
FT VSNLTTGWRRFGFKCIAEEPVYELEHVRFCQMAPVYDGSQYVMLRDPFVSMSKDSFSLT
FT HWNTTKNAKQWMKSVGICGERITGGLPVVQEYYRKYQEIAGDVKFSHSLEITSSGTYRL
FT AQNSSRAYGSVSEMARFSFFLAFGVIPDAQIALEKHIRDMPVAAEFGPDESLADHTIEW
FT LLK"
FT CDS 33. .764
FT /gene="p27"
FT /product="p27 protein"
FT /function="putative polymerase associated protein"
FT /protein_id="CAD55836.1"
FT /translation="MLRFGSQLVVGSTLIGGLTAVGLAGLSVRATIGVVEFNLRCARVV
FT GDIIRDPFNALPSAPLFPGPSVEVFAEEVRKDLEPELEAKDYLVIHEEKEMDEEGKSKV
FT VRQRSTVNRHKKGRFVHRLVCDGKNHFGGTPSASRANELAVMKYLVGKCREHHLVVQHT
FT REVCSLAMAAIFTPDHHEVNMVREMNSHAAYRRRVALADASRVHSWQQELLRSPLSWNA
FT WGRAWWIANGLPDREPVRFTK"
FT CDS 2288. .2494
FT /gene="p7"
FT /product="p7 protein"
FT /function="putative movement protein"
FT /protein_id="CAD55837.1"
FT /translation="MASKVIVPDLGSDNEIDVSVGGRGNRGKQKGKISVAKDAVSKRTS
FT DGGNGGSWVVVAETVSVNIHFNF"
FT CDS 2328. .2648
FT /gene="p12"
FT /product="p12 protein"
FT /function="putative movement protein"
FT /protein_id="CAD55838.1"
FT /translation="MRLTCQWEDVGTGVNRRVRYPSQRTLSPNGHLMVVMGVLGLLWLR
FT PFRSIYTSTFSMPPLINLQHILNLTLLSLILSSFILAERVTHNHYSNDNSKAQYIRIST
FT GQ"
FT CDS 2650. .3687
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="CAD55839.1"
FT /translation="MDAYKNDPIVRQAVAKGVAWAAKLNTRGWSSLTTQQKKAARSALS
FT VIQSPAVVVPRRTRVRNPVPAGLKSGNGKAGKSSTLTRSEFICNVSSTTGVTPTFQSWI
FT INPREVKSFPQSSVCSVGYNKYRITDFRIRFSTSCSDTMNGKVAIGFTPDSSDPVPVDK
FT SQLYGMQVYADTPAKESVTLKTAADNTIRFLRDSSSDDAKLVDYGRVVLATYGFDSTAP
FT SVIGELFFEYTVVYLDPTYVVALTQHGTLTTSSGPPYATLTTTATSTSMELNTHGKWLV
FT VWVSADEVINSPVISGSGASGSVTVVSDAQTTVVAVVTANLPGAIISNTSTAAPSSLEW
FT YVSRL"
XX
SQ Sequence 3923 BP; 992 A; 927 C; 1084 G; 920 T; 0 other;
AJ514833 Length: 3923 June 15, 2004 08:41 Type: N Check: 2979 ..
1 gggatacctt acactcggta tctggttcca acatgctacg attcggatct
51 cagttggtgg tgggttccac cttaatcggt ggtctcactg ctgtcgggct
101 ggcaggcctg agcgtgcgtg ctacaatagg tgtagtggaa ttcaacctcc
151 gctgtgctag agtggtgggt gacattatac gtgacccatt taatgccctc
201 ccttcggccc ctctattccc cgggcccagc gttgaggttt tcgctgagga
251 ggtgaggaag gacctcgagc cggagcttga ggctaaggat tacctcgtca
301 tccacgagga aaaagaaatg gatgaggagg ggaagagcaa ggtggttagg
351 cagaggtcta ctgtcaaccg ccacaagaag ggccggtttg tacaccggct
401 agtctgtgat gggaaaaacc actttggtgg gaccccttca gctagccggg
451 ccaacgagct ggcagtgatg aagtatctcg tgggtaagtg ccgcgagcac
501 cacttagtgg tgcagcacac ccgcgaagtc tgctctctgg cgatggctgc
551 catttttacc ccggaccacc atgaagtaaa catggttagg gaaatgaaca
601 gccacgccgc ctaccgaaga agggtagccc ttgcagatgc ctccagagtc
651 catagctggc agcaggagct actccgctca cccctgagtt ggaacgcttg
701 ggggagggcg tggtggatag ccaacgggct tcctgacagg gagcctgttc
751 ggttcaccaa ataggggggt cttttctgcc tcgagggtgt tgaaacagga
801 gtccgtaggg ggacgcaccc acagatgatc gaggtagaga aaaactcccc
851 cccgaaactt aggaaactct tcgcccaacg attggttagc agtggagttg
901 aataccgcgt gcataaccac tcgtttcaaa acctaaggcg aggtctgctt
951 gagagagttt tctacgtgga agaaaacaag cagttagtgt cgtgtccctg
1001 tccggaaaaa ggggccttta aggagatggg ttacctacga aagcagttcg
1051 ttagacttac tcccaaacat gccaggatct cagcaaagga atttgttgat
1101 tgctatcatg gtaggaagaa gagtgtctac gagtttgcag ccatgaccct
1151 ttctgagagg cctttggacc gcaaggatgc cagcttgaag acgttcataa
1201 aggccgagaa attttgcaag gccgacccag ctccccgggt tatacaacca
1251 agaagtccgc gctataacgt tgaattaggc cgatatctca agaaattcga
1301 acacacggcc tacagaacgc tggacaaaat ctggggagga aagaccgtaa
1351 tgaaagggta ctctgtagat gagataggga aacatatctc agaggcgtgg
1401 gattcattcc actctccggt tgctgtcgga ttcgacatga gccggttcga
1451 ccagcacgtt agtgtgcctg cgcttcaatt cgaacacagt tgttaccttg
1501 cctgttttcc cggagatcag catttggcgg aactcttgag ctggcagctc
1551 aagaattctg gtgtagggtt cgcgtcaaat ggaatggtca gatataagaa
1601 ggatgggtgt agaatgtctg gagacatgaa cactgcactg ggaaactgcc
1651 tattggcttg cctcataacg aggcacctca tgaaggacat aaattgtcga
1701 ctcgtcaata acggggatga ctgtgtattg ttcttggaca agaaggacct
1751 cccattcgtc gtgagtaatt taacgacggg ctggcgtagg tttgggttca
1801 agtgcattgc agaggagcca gtatacgagc tagagcacgt gaggttttgc
1851 cagatggccc cagtgtatga tggatcgcaa tacgtcatgt tgcgtgatcc
1901 gtttgtgtcc atgtcaaaag atagtttctc actcacccat tggaacacca
1951 caaagaatgc caaacaatgg atgaaatccg tgggcatctg tggtgagagg
2001 attacaggtg ggttaccagt tgtgcaagaa tactacagga agtaccagga
2051 aattgctgga gacgtgaagt tctctcattc cctagagata acttcatcag
2101 gaacgtacag gttagcccag aattcttctc gggcctatgg ttcagttagc
2151 gagatggcgc gttttagttt cttcctggcg tttggagtta tcccagatgc
2201 ccagattgcc ttagagaaac acataagaga catgcccgtc gcagctgaat
2251 ttgggcccga tgaaagtctg gcagaccaca caattgaatg gcttctaaag
2301 tgatcgttcc tgatttgggt agtgataatg agattgacgt gtcagtggga
2351 ggacgtggga acaggggtaa acagaagggt aagatatccg tcgcaaagga
2401 cgctgtctcc aaacggacat ctgatggtgg taatgggggt tcttgggttg
2451 ttgtggctga gaccgtttcg gtcaatatac acttcaactt ttagcatgcc
2501 ccctctgata aacctccagc acatattgaa tcttactttg ttgtccctga
2551 ttctaagttc tttcatcttg gcagagagag taacgcacaa tcactactca
2601 aacgacaaca gcaaagcgca atacatacgg atctcaactg ggcaataaca
2651 tggacgccta caagaatgac ccaatagtta ggcaggcagt ggcaaaggga
2701 gtagcttggg cggctaagct gaacactaga gggtggtctt cattgacaac
2751 ccaacagaag aaggctgcgc gctcagctct gtctgtgata caatccccag
2801 cggtggttgt acctcgcaga accagagtac gaaacccagt acccgcgggc
2851 ctgaaatcag ggaatggcaa ggcagggaaa agctcaactc taacccgatc
2901 ggagtttatc tgcaacgtat cgagcacaac cggggtgacc ccgactttcc
2951 aatcatggat tataaatcct agggaggtca aaagtttccc acaatcttcc
3001 gtctgctcgg ttggctacaa caagtacagg atcacggact tcaggattag
3051 gttttctact tcctgttccg acactatgaa tgggaaggtg gccattggct
3101 tcactcctga ctctagcgat ccggttcctg ttgataagtc acagctgtac
3151 gggatgcagg tgtatgccga cactccagca aaggagtcgg tcaccttgaa
3201 gacggctgca gataacacga ttaggttcct gcgggattca tccagcgatg
3251 atgccaagct ggtggattat ggccgcgtag ttttagccac atacggtttc
3301 gatagcacag ctccatcagt aataggagag ctgttcttcg agtacaccgt
3351 agtttatctc gaccctacct atgtcgtggc tttaacacaa catggcacgt
3401 tgaccacctc atctggcccc ccatatgcta ccttgaccac cactgccact
3451 tcaacatcca tggaattaaa cacccatgga aagtggctag tggtttgggt
3501 ctcggcagac gaggtgatca actctccggt tatatccggg tccggggcaa
3551 gcggatccgt aactgtcgtt agcgacgcac agactactgt tgttgcagtg
3601 gttaccgcaa acttgccagg cgccatcatt tccaacactt caaccgctgc
3651 cccttcgtca ctggagtggt atgtatctag gctatgagag ggcagtcacc
3701 ctaccttctg ccagaggttc ccggaggagt agtgatcctt tgggggtgat
3751 tcatagctag gaaaggtcgg agagttggga ggaggccaac tgggggaggt
3801 gctaggagca ccagatgcag cagagcaaaa atccgggttt catcgcctgg
3851 tgcgggcgct caatgctgct aacacgttcc tgaaggaaga aaggtttcgg
3901 tcgatggaga ccttaacccg ccc