Sequence of DPV Barley yellow mosaic virus
Barley yellow mosaic virus 1 gene for polyprotein 1, genomic RNA, isolate ASL1
ACC No: AJ515484
Dated: 2003-09-19 | Length: 7563 | CRC: -411562395
!!NA_SEQUENCE 1.0
ID BYE515484 standard; mRNA; VRL; 7563 BP.
XX
AC AJ515484;
XX
SV AJ515484.1
XX
DT 11-SEP-2003 (Rel. 77, Created)
DT 19-SEP-2003 (Rel. 77, Last updated, Version 2)
XX
DE Barley yellow mosaic virus 1 gene for polyprotein 1, genomic RNA, isolate
DE ASL1
XX
KW 1 gene; 6K1 protein; 6K2 protein; CI protein; coat protein;
KW NIa-Pro protein; NIb protein; P3 protein; polyprotein 1; VPg protein.
XX
OS Barley yellow mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Bymovirus.
XX
RN [1]
RP 1-7563
RA Adams M.J.;
RT ;
RL Submitted (07-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research,
RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN [2]
RA Kuehne T., Shi N., Proeseler G., Adams M., Kanyuka K.;
RT "The ability of a bymovirus to overcome the rym4-mediated resistance in bar
RT ley correlates with a codon change in the VPg coding region on RNA1";
RL J. Gen. Virol. 84:2853-2859(2003).
XX
FH Key Location/Qualifiers
FH
FT source 1. .7563
FT /country="Germany"
FT /db_xref="taxon:12465"
FT /mol_type="mRNA"
FT /virion
FT /organism="Barley yellow mosaic virus"
FT /isolate="ASL1"
FT /isolation_source="Aschersleben"
FT /strain="1 (common)"
FT /specific_host="Hordeum vulgare"
FT 5'UTR <1. .134
FT CDS 135. .7373
FT /gene="1"
FT /product="polyprotein 1"
FT /protein_id="CAD56476.1"
FT /translation="MEQTLAQAVSRRGKTNTLTAEERKPFSPMNFSANFVAPELFYSAN
FT VRKIKNIFRERSTTRFLDAISSDFELVAFLTLSPAHLMQLETTLRQEIRSCVVPIVTSD
FT ASFETVAVIKTALDGMRFHFGHTTLEKGWMSMMRHAESCLQESSSSAVNDLQMQIKRVG
FT SLLLSGKNRVESCELSVLNLTARRFRIEYGLNGTYFGEHVAMLFDLKRYIYGTVPKEFL
FT WAKTKKHSLFTTPEWIKRTPIGCFLFCLRVIPILHRFGVAISLLYWSCVAALNFPAFMA
FT FLFKRQFAKYLAHSFAKHSIYFIFLTIIAILWSFRTFASQKPKIVLQARSTAEKEKKLM
FT MILASVVGITYLFDYDIAETLGNCLHKISRLSSYLLDDHQGIASRMFGASYGLQAGDSA
FT EDAVTTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMSRPLQYDVN
FT KTYALTPQNVQLQARAMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILI
FT CEPTQAATENVCAGVAANLGRAVYGRHEGWSRMGDHCIQVMTYGSAPQCHAMDPSFIST
FT FDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAARKYPLHVETSV
FT CDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVTGEKRAFPLSSDN
FT FATDFSMLTERLKTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPCLDLNQKSLRLDRR
FT RVTRNERQQRIGRAGRLKDGYAIVCGDVDRAVNVISPDVLYGAALLSFKHNVPFYMNET
FT FESSWLEGVTKAQADTMTIFKLPIFLTRDLINADGSVAREFLDVLKKHQFTTSDIKQAP
FT SVTAKHIFPTWASYFSLHQALHYGDDKDEIPHELRYARVPFSVTTLSKFDWPALALACE
FT KHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLTHMSKNYKTLIENNQHVRQSMMT
FT NVMFKWFSSTRITKDLDRNLRRCTDNLSVVEATLSSLRQILAGNTQVYATPHMQSTLED
FT IIELQASDTLTEESLANALGIFVPKCNLFLLLATKGFKLVYVVCILLLVNLVYTGLRKW
FT REHLKQKGSNEILTNTMPVSEGGEILAEVMKMEPKMRKNIKRDMHAAVESKLCGFTFVF
FT PDDDKIGLEGKGNKYRPREDARLMYSTREDATFDAWNEKAKERRKKVTDKAEPELRRAY
FT EKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNRDMNLVADKLRSFLDTKLVVGH
FT HQRKLLEETANVVIKDTKGAAHKMEISQHDPDFLEQNGSGKVGYPEHRGQFRQEGVAVT
FT GDYDLEAEFGADADEITLEASTGILLSQVGVDVATRVGRICIGTFNMNCYFYSDWILVP
FT GHLQDRSGNVTIQFPDQTVQTTTDALNANGVRRFYGLDIIAIRRPAILRPRTKLVKAFA
FT IEEPVIAQMVFVDAQGVRKFTQSDWARKEENSGRWSHKISTVLGMCGCPVLDVGKNRLI
FT GIHVATNYTKKRNEFQPFTQEVVDFINGPGTKIPYCPWVFDRPACGYSSHNALFEKPTT
FT LADVIHMQASDGLHNINNAIEGFGSSLKGQLVSPPTESTRQRFDKLFGSGSFELIGQMN
FT KGLIDKHVIVGENDDVYDFMREHPTFTWLKDFMNEYAPSVLSYSAYYKDLCKYNRAKHV
FT LTYNPEELHCATKGLIKMLEDAGLTQGSVRTPQQVVSDIQWNTSAGPSYQGKKRDLCAH
FT LSDDEVLHLAEVCRQQFLEGKSTGVWNGSLKAELRTIEKVEAEKTRVFTASPITSLFAM
FT KFYVDDFNKKFYATNLKAPHTVGINKFGRGWEKLHDKLNRPGWLHGSGDGSRFDSSIDP
FT FFFDVVKTIRKHFLPSEHHKAIDLIYDEILNTTICLANGMVIRKNVGNNSGQPSTVVDN
FT TLVLMTAFLYAYIHKTGDRELALLNERFIFVCNGDDNKFAISPQFDEEFGHDFSPELVE
FT LGLTYEFDDITSDICENPYMSLTMVKTPFGVGFSLPVERIIAIMQWSKKGGVLHSYLAG
FT ISAIYESFNTPKLFKSIYAYLLWLTEEHGAEILAAMTQSSTALPIPSMLDVYRLHYGDD
FT EIWLQAADPLTDAQKEAAHTAAADRARLDLADADRRRKVEADRVEAARVEKAADAALKP
FT VNLTATRMPTEDDGKLKTPSGARIPSSAADGNWSVPATKQVNAGLTLKIPLNKLKSVPR
FT SVMEHNNSVALESELKAWTDAVRTSLGITTDEAWIDALIPFIGWCCNNGTSDKHAENQV
FT MQIDSGKGAVTEMSLSPFIVHARMNGGLRRIMRNYSDETVLLITNNKLVAHWSMKHGAS
FT ANVKYAFDFFVPRSWMNPQDIEVSKQARLAALGTGTYNTMLTSDTTNLRKTTNHRVLDS
FT DGHPELT"
FT mat_peptide 135. .1118
FT /gene="1"
FT /product="P3 protein"
FT mat_peptide 1119. .1316
FT /gene="1"
FT /product="6K1 protein"
FT mat_peptide 1317. .3293
FT /gene="1"
FT /product="CI protein"
FT mat_peptide 3294. .3659
FT /gene="1"
FT /product="6K2 protein"
FT mat_peptide 3660. .4220
FT /gene="1"
FT /product="VPg protein"
FT mat_peptide 4221. .4895
FT /gene="1"
FT /product="NIa-Pro protein"
FT mat_peptide 4896. .6479
FT /gene="1"
FT /product="NIb protein"
FT mat_peptide 6480. .7370
FT /gene="1"
FT /product="Coat protein"
FT 3'UTR 7374. .>7563
XX
SQ Sequence 7563 BP; 2096 A; 1747 C; 1712 G; 2008 T; 0 other;
AJ515484 Length: 7563 September 30, 2003 08:39 Type: N Check: 1150 ..
1 aacaaacaca aacatcgcac gcttcccgag ctcacaacac ctgtagagtg
51 atttttgtca tcctactgtt tgtaagcttt tcagcaaatc aacccgcttg
101 cttttgcacc tccttcacct tcactctcgc tcttatggag caaaccctag
151 ctcaagctgt gtcacggaga ggtaaaacaa acacacttac ggcagaagag
201 cggaaacctt tcagccccat gaatttttcc gcaaactttg ttgctcctga
251 gctcttttat agtgctaatg tgaggaaaat taaaaatatc ttcagagagc
301 gcagcacaac tcggtttctg gatgcaattt caagtgattt tgagctcgtt
351 gcttttctca ctttgagtcc cgctcactta atgcaacttg agacaactct
401 gcgccaagaa atacgttcgt gtgtcgtgcc aattgttacc tctgatgcta
451 gcttcgaaac agtcgctgtc atcaaaactg ctctggatgg catgagattt
501 cactttggac acaccactct tgaaaagggg tggatgtcca tgatgcgcca
551 tgcagagagt tgcctgcaag agagctcctc ttcggctgtg aatgatctgc
601 agatgcagat taaacgcgtt ggatcattgc tcttgagtgg aaaaaatcgc
651 gtagaaagct gcgaactatc tgtcttgaac ctcacagcgc gacgtttcag
701 gatcgaatat gggctaaatg gtacatactt tggcgaacat gttgctatgc
751 tattcgactt aaagcgttat atctatggta ccgtgccaaa agagtttttg
801 tgggcgaaaa ccaaaaagca ctcgctattc acaacccccg agtggatcaa
851 gcgtacgccc atcggctgtt tcttgttctg tcttcgcgtt atccctatct
901 tacataggtt tggtgtggcc atatcactcc tttactggtc gtgtgttgct
951 gctctgaatt ttcctgcttt tatggctttc ttatttaagc gtcagtttgc
1001 taagtattta gctcactctt ttgctaaaca ctccatctac tttatatttt
1051 taactataat tgctatttta tggtcttttc gcacttttgc ttctcaaaaa
1101 ccaaaaatag tgcttcaggc taggagcaca gcagaaaaag agaaaaagct
1151 tatgatgatt ctagctagtg tcgttgggat cacttatctc ttcgattatg
1201 acatagcaga aactctcggg aattgtctac ataaaataag ccgtctatcc
1251 tcatatcttc tcgacgacca tcaaggcatc gcatcacgaa tgtttggagc
1301 gagctatggg cttcaggctg gcgatagtgc tgaggatgca gttacaacga
1351 taatcagcga cctactgtct gttactttta aaattgtgga cgaagatgca
1401 tcacagggca ccgtggagga tgcatctgag acaacctttc acagttgggt
1451 tggtgttaac acacttgcag gtcgcaatat gtcaagacca ctccagtatg
1501 acgtcaataa aacatatgca ctcacacctc aaaatgtcca gctccaagcg
1551 cgagctatgg cagacgctaa caactgctgg tcaatggttg ttggtcatac
1601 aggatctggg aagtcaacat acttacctgt gcagtactcc aattacttat
1651 ctaccaagag tgatagacga cagcagattc ttatctgcga gccaactcag
1701 gctgccactg agaacgtttg cgctggcgtt gctgccaatc ttggcagagc
1751 tgtttacggg cgccatgagg gttggtccag aatgggggat cattgcattc
1801 aagttatgac gtatggttcc gcgccccagt gccatgctat ggaccctagc
1851 ttcatatcaa ctttcgacgc aatcttcctt gatgaagcac acgacgtcaa
1901 agagcactct ttagtctttg agagcatttg tgacacattt aaatccgttc
1951 gaaagttcta tgtttcagcc actcctagag atggaagtgt atgtcctgaa
2001 gcagccagga aatatccttt acatgttgaa actagcgttt gcgattcgta
2051 tcggaagttc attgcagctc aaggtggggg agatttgctg gacatctcaa
2101 aacatgacac agctttagtc tttctagcag gacggcctga gtgtattaaa
2151 gctgctaatg cctggaatgc tagtgtcacc ggtgagaagc gcgcctttcc
2201 tttgtcgagc gacaactttg ctaccgactt ctcaatgctc accgagaggc
2251 tcaaaacaca caaaaccatc atcttcacca cgaacataat tgagacaggt
2301 gttactctta gcgttgattg tgttgttgat ttcggccata cgatgcgccc
2351 atgtttggat ctcaatcaaa aatcattacg tcttgatcga cgcagagtga
2401 cgcgaaacga aagacagcag agaattgggc gagcaggtcg gctcaaagac
2451 gggtacgcca tagtgtgtgg agatgttgat agggctgtaa atgtcatctc
2501 tcctgatgtt ctttatggtg ccgctcttct gagttttaaa cacaatgtgc
2551 ctttctacat gaacgaaaca tttgagagtt cctggttgga gggtgttaca
2601 aaggcacaag ctgacacaat gacaatattc aagcttccta tatttctaac
2651 acgagacctc attaatgcag atggttcagt tgctagggag tttctcgatg
2701 ttttaaagaa gcatcaattc acaacaagtg acataaagca agcaccaagt
2751 gtcacagcca aacacatctt cccaacttgg gcttcgtact tctctctcca
2801 tcaggcgctt cattatggtg atgacaagga tgagatacca cacgagttgc
2851 gatatgcgcg cgttcctttc tccgtcacaa ctttgagcaa attcgattgg
2901 ccagccttag ctcttgcatg cgagaaacat agggcttcca tgtcaaatgt
2951 gtttgctggc atcgaggaac ccgcacgcgt tgttactcta caaacaaatc
3001 ctgcgaacat acaagcaagc atcacacatt taacacatat gagcaagaac
3051 tataaaactc ttattgaaaa caaccagcac gtgcgccaat ccatgatgac
3101 gaatgttatg ttcaagtggt tttcttccac tcgcattacc aaagatcttg
3151 ataggaactt gcgaagatgc acggataacc tctcagttgt cgaggccacg
3201 cttagctcac ttaggcaaat cttagctggc aacacgcagg tttacgcaac
3251 gccgcacatg cagagcactc ttgaggatat tattgagctc caggctagcg
3301 acacactcac ggaagaaagc ttagcaaacg cacttggcat ctttgtccca
3351 aagtgcaacc tctttctgct gctagctact aaaggtttca agcttgtgta
3401 cgttgtctgc atcttacttc ttgtgaacct tgtttacact ggtcttcgta
3451 agtggcgcga gcatctcaag caaaagggaa gtaacgaaat cctaactaac
3501 acaatgccag ttagcgaagg gggcgaaatt ctcgctgaag tcatgaaaat
3551 ggagcctaaa atgagaaaga acatcaagag ggatatgcat gcagctgttg
3601 agagcaaact atgtggcttc acttttgttt ttccagatga tgataaaatt
3651 ggtcttgaag gcaagggaaa caaataccgc cctcgcgaag acgctcgcct
3701 gatgtactcc actagagaag acgctacctt tgacgcctgg aatgagaaag
3751 cgaaggaaag acgcaagaaa gtaaccgaca aagctgagcc agagcttcgc
3801 agagcctatg agaagagacc atacttcaat ttctacgacc ttcaaacaga
3851 tagcaacatt ctggaagcta ttttctacac cactgaaggt gatgagtttt
3901 tccgaacagc agaccctaac agggacatga acttggttgc tgataaactg
3951 cgctcttttc tcgatacaaa gcttgttgtt ggacaccatc agcggaagct
4001 actagaagaa acagctaatg ttgttatcaa ggacacgaag ggagctgcgc
4051 acaagatgga aatttcacag catgatccag attttctgga gcagaatggg
4101 tccggcaaag ttgggtatcc agaacaccga ggacagtttc ggcaggaagg
4151 agtcgccgtc acaggggatt acgatcttga agctgagttt ggcgccgatg
4201 ctgatgaaat aacgctcgag gcctctactg gaattttatt gtcacaagtt
4251 ggggtcgatg ttgcaactcg agttggaaga atttgcattg gcactttcaa
4301 tatgaactgt tacttctata gcgactggat tctagttcca ggacacctgc
4351 aagatagatc tggcaacgta acaattcaat tccctgacca aacagtgcaa
4401 accacaaccg acgcactcaa cgcgaatggt gtgagacgat tctatggatt
4451 agatataata gcaattcgtc gccctgctat cttgcggcct cgcaccaagt
4501 tggtcaaagc ttttgctatt gaggaaccag ttatcgcaca aatggtcttt
4551 gttgatgcac agggagtccg caagttcact caatctgatt gggccaggaa
4601 ggaggagaat tctgggcgtt ggtcacacaa gatctccact gttcttggta
4651 tgtgtggatg cccagtcttg gacgttggaa agaacagatt aatagggatc
4701 catgttgcca caaactacac aaagaagcgc aacgagttcc aacccttcac
4751 tcaggaggtt gtcgacttta taaatggacc tggaacaaaa attccctact
4801 gcccatgggt atttgataga ccggcttgtg ggtattcatc ccacaacgct
4851 ttgttcgaga aaccaaccac actggctgac gtcattcaca tgcaggcttc
4901 tgatggtttg cacaacatca acaatgccat tgagggtttt gggagctcac
4951 tgaagggtca gcttgtgtca ccacctactg aatccaccag gcaacgtttc
5001 gataagctgt ttggtagcgg cagctttgag ctcattgggc agatgaacaa
5051 aggcttaatc gacaagcacg tgattgttgg ggaaaacgat gatgtctatg
5101 acttcatgcg cgagcaccca acatttactt ggttgaaaga tttcatgaat
5151 gaatatgcgc ccagtgtttt gtcttattct gcttactaca aggacctttg
5201 taagtataat cgtgcaaaac acgtgctcac ttacaaccca gaagagctcc
5251 attgtgcgac gaaaggactg atcaagatgt tggaagacgc tggcttgaca
5301 caaggcagtg tgaggacacc ccaacaagtt gtttcggaca ttcaatggaa
5351 cacttccgct ggaccaagtt atcaagggaa gaaacgcgac ctctgtgccc
5401 acttgagcga tgacgaggtg ctgcatcttg ctgaggtttg tcgtcaacaa
5451 tttcttgagg gcaagtcaac tggagtgtgg aacggttctc tgaaagctga
5501 attgagaacc attgagaaag ttgaggcgga gaaaacgcgc gttttcacag
5551 cctctcccat aacaagcctg tttgccatga aattctacgt tgatgacttt
5601 aacaagaagt tctatgctac caatctgaaa gccccccaca ctgttggcat
5651 caataagttc ggtaggggat gggaaaaatt gcatgacaag cttaatcgcc
5701 ctggatggtt gcacggcagt ggggatggtt ctaggttcga tagctctatc
5751 gatcctttct tctttgacgt tgtgaaaact attcgtaagc actttctccc
5801 ttctgagcat cataaagcca ttgatctcat atatgatgag attctcaaca
5851 caaccatctg cctggctaat gggatggtta tcaggaagaa tgttggaaac
5901 aatagcgggc agcctagtac tgttgttgat aacacacttg tgcttatgac
5951 tgcattcctc tacgcataca ttcacaagac aggggatcgt gagttagcct
6001 tgctaaacga gcgtttcatc tttgtttgca acggtgatga caataagttt
6051 gccatatctc cgcagtttga tgaagagttt gggcacgatt tttccccaga
6101 acttgttgaa cttggactta cgtatgagtt tgatgacatc actagcgaca
6151 tttgcgagaa tccttacatg tccctcacta tggttaaaac tccttttggt
6201 gttggttttt ctcttcccgt ggaaagaatc atagccataa tgcagtggtc
6251 caagaaaggg ggggttttgc actcatattt agctggcatc tctgcaattt
6301 acgaatcctt caatacacca aaactcttca aatcaattta tgcgtacctt
6351 ctttggctca ctgaggagca cggggcagaa attcttgcag ccatgactca
6401 atcctcaacc gcccttccta taccatcaat gctcgatgtt tatcggttgc
6451 actatggtga tgatgaaatt tggctgcaag cagctgatcc tctcactgat
6501 gcgcaaaaag aagctgcaca cactgccgca gctgatagag cacgcctcga
6551 cctagccgac gctgaccgta gacgtaaagt tgaagcggac cgtgtggaag
6601 cggcaagagt tgaaaaggca gctgatgctg cgctaaaacc agttaacctc
6651 acagcaacac gcatgcccac agaagatgat ggcaaactta aaacgccatc
6701 tggtgctaga ataccatcat cagctgcaga tggtaactgg agcgtgccgg
6751 caacgaagca agttaacgct ggtttaacac tcaaaattcc cctgaataag
6801 ctcaaaagtg tgcctaggtc tgttatggaa cataacaact cagttgcact
6851 tgaatctgag ctgaaagcct ggactgatgc tgtgcgcaca agtttaggta
6901 tcacaactga tgaggcatgg atcgatgccc tcataccctt catcggatgg
6951 tgctgcaaca atggcacctc agacaagcat gctgagaatc aagtaatgca
7001 aattgacagc ggaaagggag ctgtcacaga gatgagtctg tccccattta
7051 ttgttcatgc tcgaatgaat ggtggactcc gaaggatcat gcgtaactac
7101 agtgatgaaa ccgtcttact catcacaaac aacaaactag ttgcacattg
7151 gtcaatgaag catggcgctt ctgcaaatgt aaaatatgct ttcgatttct
7201 tcgtcccacg atcatggatg aacccacagg acatcgaagt atcaaagcaa
7251 gcgcgcttag cagcacttgg aactggaacg tataacacca tgttaacttc
7301 cgacactacc aatctgcgta agacaaccaa ccacagggtt ctggactcag
7351 atggacaccc agaactaacc taaaccatca ccccgtgcct tatacatcac
7401 ccacccccac tcataattca gtctttaaat tatgttcgtg acgtctttgt
7451 atcaggctcg gaacggttct atgatccata tgcctttggc agttacagtg
7501 tcagcattct cattgaggag tatgacagcg tttgatcagc cgttttcaat
7551 catccgtcgt tgg