Sequence of DPV Barley yellow mosaic virus

Barley yellow mosaic virus partial gene for polyprotein, genomic RNA1, isolate WST, strain 1

ACC No: AJ517474

Dated: 2003-09-19 | Length: 936 | CRC: 29735627

                !!NA_SEQUENCE 1.0
ID   BYE517474  standard; mRNA; VRL; 936 BP.
XX
AC   AJ517474;
XX
SV   AJ517474.1
XX
DT   11-SEP-2003 (Rel. 77, Created)
DT   19-SEP-2003 (Rel. 77, Last updated, Version 2)
XX
DE   Barley yellow mosaic virus partial gene for polyprotein, genomic RNA1,
DE   isolate WST, strain 1
XX
KW   14 kDa protein; NIa protein; polyprotein; VPg protein.
XX
OS   Barley yellow mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Bymovirus.
XX
RN   [1]
RP   1-936
RA   Kanyuka K.;
RT   ;
RL   Submitted (19-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL   Kanyuka K., Plant-Pathogen Interactions Division, Rothamsted Research,
RL   Harpenden, Hertfordshire, AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Kuehne T., Shi N., Proeseler G., Adams M., Kanyuka K.;
RT   "The ability of a bymovirus to overcome the rym4-mediated resistance in bar
RT   ley correlates with a codon change in the VPg coding region on RNA1";
RL   J. Gen. Virol. 84:2853-2859(2003).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .936
FT                   /country="Germany"
FT                   /db_xref="taxon:12465"
FT                   /mol_type="mRNA"
FT                   /virion
FT                   /organism="Barley yellow mosaic virus"
FT                   /isolate="WST"
FT                   /strain="1"
FT                   /specific_host="Hordeum vulgare"
FT   CDS             <1. .>936
FT                   /codon_start=1
FT                   /note="RNA1"
FT                   /product="polyprotein"
FT                   /protein_id="CAD57008.1"
FT                   /translation="AVESKLCGFTFVFPDDDKIGLEGKGNKYRPREDARLMYSTREDAT
FT                   FDAWDEKAKERRKKVTDKAEPELRRAYEKRPYFNFYDLQTDSNILEAIFYTTEGDEFFR
FT                   TADPNKDMNLVADKLRSFLDTKLVVGHHQRKLLEETAEVVIKDTKGTAHKMAISQHDPD
FT                   SLKQNGSGKVGYPEHRGQFRQEGVAITGDYDLEAEFGADTDEITLEASTGILLSQVGVD
FT                   VATRVGRICIGTFNMNCYFYSDWILVPGHLQDRSGNVTIQFPDQTVQTTTDALNANGVK
FT                   RFYGLDVIAIRRPAALRPRTKLVKAFAIEEP"
FT   mat_peptide     <1. .66
FT                   /product="14 kDa protein"
FT   mat_peptide     67. .627
FT                   /product="VPg protein"
FT   mat_peptide     628. .>936
FT                   /product="NIa protein"
XX
SQ   Sequence 936 BP; 273 A; 205 C; 231 G; 227 T; 0 other;

AJ517474  Length: 936  September 30, 2003 08:39  Type: N  Check: 2613  ..

       1  gctgttgaga gcaaactatg tggtttcacc tttgtttttc cagatgatga
      51  taaaattggt cttgaaggca aggggaacaa ataccgccct cgcgaagacg
     101  ctcgcctgat gtactccact agagaggacg ccacctttga cgcctgggat
     151  gagaaagcga aggaaagacg taagaaggta accgacaaag ctgagccaga
     201  gcttcggaga gcctatgaga agagaccata cttcaatttc tacgatcttc
     251  aaacagatag caacattctg gaagctattt tctacaccac tgaaggcgat
     301  gagtttttcc gaacagcaga ccctaataag gacatgaact tggttgctga
     351  taaactacgc tcctttctcg atacaaagct tgttgttgga caccatcagc
     401  ggaagctact agaagaaaca gctgaggttg ttattaagga tacgaaggga
     451  actgcgcaca agatggctat ttcacagcat gatccagatt ctctgaagca
     501  gaatgggtcc ggcaaagttg ggtatccaga acaccgagga cagtttcggc
     551  aggaaggagt tgccatcaca ggggattacg atcttgaagc tgagtttggc
     601  gccgacaccg atgaaataac gcttgaggcc tctactggaa ttttattgtc
     651  acaagttggg gtcgatgttg caactcgagt tgggagaatt tgcattggca
     701  ctttcaatat gaactgttac ttctatagcg actggattct agttccagga
     751  cacctgcaag atagatctgg caacgtaaca attcaattcc ctgaccaaac
     801  agtgcaaacc acaaccgatg cactcaacgc gaatggtgtg aaacgattct
     851  atggattaga tgtgatagca attcgtcgcc ctgctgcctt gcggcctcgc
     901  accaagttgg tcaaagcttt tgctattgag gaacca