Sequence of DPV Barley yellow mosaic virus

Barley yellow mosaic virus partial gene for polyprotein, genomic RNA1, isolate SLA, strain 2

ACC No: AJ517476

Dated: 2003-09-19 | Length: 936 | CRC: 626312334

                !!NA_SEQUENCE 1.0
ID   BYE517476  standard; mRNA; VRL; 936 BP.
XX
AC   AJ517476;
XX
SV   AJ517476.1
XX
DT   11-SEP-2003 (Rel. 77, Created)
DT   19-SEP-2003 (Rel. 77, Last updated, Version 2)
XX
DE   Barley yellow mosaic virus partial gene for polyprotein, genomic RNA1,
DE   isolate SLA, strain 2
XX
KW   14 kDa protein; NIa protein; polyprotein; VPg protein.
XX
OS   Barley yellow mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Bymovirus.
XX
RN   [1]
RP   1-936
RA   Kanyuka K.;
RT   ;
RL   Submitted (19-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL   Kanyuka K., Plant-Pathogen Interactions Division, Rothamsted Research,
RL   Harpenden, Hertfordshire, AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Kuehne T., Shi N., Proeseler G., Adams M., Kanyuka K.;
RT   "The ability of a bymovirus to overcome the rym4-mediated resistance in bar
RT   ley correlates with a codon change in the VPg coding region on RNA1";
RL   J. Gen. Virol. 84:2853-2859(2003).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .936
FT                   /country="Germany:Schladen"
FT                   /db_xref="taxon:12465"
FT                   /mol_type="mRNA"
FT                   /virion
FT                   /organism="Barley yellow mosaic virus"
FT                   /isolate="SLA"
FT                   /strain="2"
FT                   /specific_host="Hordeum vulgare"
FT   CDS             <1. .>936
FT                   /codon_start=1
FT                   /note="RNA1"
FT                   /product="polyprotein"
FT                   /protein_id="CAD57010.1"
FT                   /translation="AVESKLCGFTFVFPDDDKIGLEGKGNKYRPREDARLMYSTREDAT
FT                   FDAWNEKAKERRKKVTDKAEPELRRAYEKRPYFNFYDLQTDSNILEAIFYTTEGDEFFR
FT                   TADPNRDTNLVADKLRSFLDTKLVVGHHQRKLLEETANVIIKDTKGTAHNMEISQHDPD
FT                   FLKQNGSGKVGYPEHRGQFRQEGVARTGDYDLEAEFGADADEITLEASTGILLSQVGVD
FT                   VATRVGRICIGTFNMNCYFYSDWILVPGHLQDRSGNVTIQFPDQTVQTTTDALNANGVK
FT                   RFYGLDVIAIRRPAILRPRTKLVKAFAIEEP"
FT   mat_peptide     <1. .66
FT                   /product="14 kDa protein"
FT   mat_peptide     67. .627
FT                   /product="VPg protein"
FT   mat_peptide     628. .>936
FT                   /product="NIa protein"
XX
SQ   Sequence 936 BP; 280 A; 205 C; 225 G; 226 T; 0 other;

AJ517476  Length: 936  September 30, 2003 08:39  Type: N  Check: 9236  ..

       1  gctgttgaga gcaaactatg tggcttcact tttgtttttc cagatgatga
      51  taaaattggt cttgaaggca agggaaacaa ataccgccct cgcgaagacg
     101  ctcgcctgat gtactccact agagaagacg ccacctttga cgcctggaat
     151  gagaaagcga aggaaagacg caagaaagta accgacaaag ctgagccaga
     201  gcttcggaga gcctatgaga agagaccata tttcaatttc tacgaccttc
     251  aaacagatag caacattctg gaagctattt tctacaccac tgaaggtgat
     301  gagtttttcc gaacagcaga ccctaacagg gacacgaact tggttgctga
     351  taaactgcgc tcttttctcg atacaaagct tgttgttgga caccatcagc
     401  ggaagctact agaagaaaca gctaatgtta ttatcaagga cacgaaggga
     451  actgcgcaca atatggaaat ttcacagcat gatccagatt ttctgaagca
     501  gaatgggtcc ggcaaagttg ggtatccaga acaccgagga cagtttcggc
     551  aggaaggagt tgcccgcaca ggggattatg atcttgaagc tgagtttggc
     601  gccgatgctg atgaaataac gcttgaggcc tctactggaa ttttattgtc
     651  acaagttggg gtcgatgttg caactcgagt tggaagaatt tgcattggca
     701  ctttcaatat gaactgttac ttctatagcg actggattct agttccagga
     751  cacctgcaag atagatctgg caacgtaaca attcaattcc ctgaccaaac
     801  agtgcaaacc acaaccgacg cactcaacgc gaatggtgtg aaacgattct
     851  atggattaga tgtaatagca attcgtcgcc ctgcgatcct gcggcctcgc
     901  accaagttgg tcaaagcttt tgctattgag gaacca