Sequence of DPV Barley yellow mosaic virus
Barley yellow mosaic virus partial gene for polyprotein, genomic RNA1, isolate GB, strain 2
ACC No: AJ517478
Dated: 2003-09-19 | Length: 4420 | CRC: 864096158
!!NA_SEQUENCE 1.0
ID BYE517478 standard; mRNA; VRL; 4420 BP.
XX
AC AJ517478;
XX
SV AJ517478.1
XX
DT 11-SEP-2003 (Rel. 77, Created)
DT 19-SEP-2003 (Rel. 77, Last updated, Version 2)
XX
DE Barley yellow mosaic virus partial gene for polyprotein, genomic RNA1,
DE isolate GB, strain 2
XX
KW 14 kDa protein; 7 kDa protein; CI protein; NIa protien; P3 protein;
KW polyprotein; VPg protein.
XX
OS Barley yellow mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Bymovirus.
XX
RN [1]
RP 1-4420
RA Kanyuka K.;
RT ;
RL Submitted (19-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL Kanyuka K., Plant-Pathogen Interactions Division, Rothamsted Research,
RL Harpenden, Hertfordshire, AL5 2JQ, UNITED KINGDOM.
XX
RN [2]
RA Kuehne T., Shi N., Proeseler G., Adams M., Kanyuka K.;
RT "The ability of a bymovirus to overcome the rym4-mediated resistance in bar
RT ley correlates with a codon change in the VPg coding region on RNA1";
RL J. Gen. Virol. 84:2853-2859(2003).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4420
FT /country="Germany:Gatersleben"
FT /db_xref="taxon:12465"
FT /mol_type="mRNA"
FT /virion
FT /organism="Barley yellow mosaic virus"
FT /isolate="GB"
FT /strain="2"
FT /specific_host="Hordeum vulgare"
FT 5'UTR <1. .25
FT CDS 26. .>4420
FT /note="RNA1"
FT /product="polyprotein"
FT /protein_id="CAD57012.1"
FT /translation="MEQTLAQAVSRRGKTNTPTAEERKPFSPMNFSANFVAPELFYSAN
FT VRKIKNIFRERSTTRFLDAISSDFELVAFLTLSPAHLMQLETTLRQEIRSCVVPIVTSD
FT ASFETVAVIKTALDGMRFHFGHTTLEKGWMSMMRHAESCLQESSSSAVNDLQMQIKRVG
FT SLLLSGKNRVESCELSVLNLTARRFRIEYGLNGTYFGEHVAMLFDLKRYIYGTVPKEFL
FT WAKTKKHSLFTTPEWIKRTPIDCFLFCLRVIPILHRFGVAISLLYWSCVAALNFPAFMA
FT FLFKRQFAKYLAHSFAKHSIYFIFLTIIAILWSFRTFASQKPKIVLQARSTAEKEKKLM
FT MILASVVGITYLFDYDIAETLGNCLHKISRLSSYLLDDHQGIASRMFGASYGLQAGDSA
FT EDAVTTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMSRPLQYDVN
FT KTYALTPQNVQLQARAMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILI
FT CEPTQAATENVCAGVAANLGRAVYGRHEGRSRMGDHCIQVMTYGSALQCHAMDPSFIST
FT FDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAARKYPLHVETSV
FT CDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVTGEKRAFSLSSDN
FT FATDFSMLTERLKTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPCLDLNQKSLRLDRR
FT RVTRNERQQRIGRAGRLKDGYAIVCGDVDKAVNVISPDVLYGAALLSFKHNVPFYMNET
FT FESSWLEGVTKAQADTMTIFKLPIFLTRDLINADGSVAREFLDVLKKHQFTTSDIKQAP
FT SVTAKHIFPTWASYFSLHQALHYGDDKDEIPHELRYARVPFSVTTLSKFDWPALALACE
FT KHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLTHMSKNYKTLIENNQHVRQSMMT
FT NVMFKWFSSTRITKDLDRNLRRCTDNLSVVEATLSSLRQILAGNTQVHATPHMQSTLED
FT IIELQASDTLTEESLANALGIFVPKCNLFLLLATKGFKLVYVVCILLLVNLVYTGLRKW
FT REHLKQKGSDEILTNTMPVSEGGEILAEVMKMEPKMRKNIKRDMDAAVESKLCGFTFVF
FT PDDDKIGLEGKGNKYRPREDARLMYSTREDATFDAWNEKAKERRKKVTDKAEPELRRAY
FT EKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNKDMNLVADKLRSFLDTKLVVGH
FT HQRKLLEETAAVVIRDTKGTVHNMEISQHDPDFLKQNGSGKVGYPEHRGQFRQEGVAIT
FT ADYDLEAEFGADTDEITLEASTGILLSQVGVDVATRVGRICIGTFNMNCYFYSDWILVP
FT GHLQDRSGNVTIQFPDQTVQTTTDALNANGVKRFYGLDVIAIRRPAALRPRTKLVKAFA
FT IEEP"
FT mat_peptide 26. .1039
FT /product="P3 protein"
FT mat_peptide 1040. .1207
FT /product="7 kDa protein"
FT mat_peptide 1208. .3184
FT /product="CI protein"
FT mat_peptide 3185. .3550
FT /product="14 kDa protein"
FT mat_peptide 3551. .4111
FT /product="VPg protein"
FT mat_peptide 4112. .>4220
FT /product="NIa protein"
XX
SQ Sequence 4420 BP; 1222 A; 1006 C; 1001 G; 1191 T; 0 other;
AJ517478 Length: 4420 September 30, 2003 08:39 Type: N Check: 6984 ..
1 ctccttcacc ttcactctcg ctcttatgga gcaaacccta gctcaagctg
51 tgtcacggag aggtaaaaca aacacaccta cggcagaaga gcggaaacct
101 ttcagcccca tgaatttttc cgcaaacttt gttgctcctg agctctttta
151 tagtgctaat gtgaggaaaa ttaaaaatat cttcagagag cgcagcacaa
201 ctcggtttct ggatgcaatt tcaagtgatt ttgagctcgt tgcttttctc
251 actttgagtc ccgctcactt aatgcaactt gagacaactc tgcgccaaga
301 aatacgttcg tgtgttgtgc caattgttac ctctgatgct agcttcgaaa
351 cagttgctgt catcaaaact gctctggatg gcatgagatt tcactttgga
401 cacaccactc ttgaaaaggg gtggatgtcc atgatgcgcc atgcagagag
451 ttgcctgcaa gagagctcct cttcggctgt gaatgatctg cagatgcaga
501 ttaaacgcgt tggatcattg ctcttgagtg gaaaaaatcg cgtagaaagc
551 tgcgaactat ctgtcttgaa cctcacagcg cgacgtttca ggatcgaata
601 tgggctaaat ggtacatact ttggcgaaca tgttgctatg ctattcgact
651 taaagcgtta tatctatggt accgtgccaa aagagttttt gtgggcgaaa
701 accaaaaagc actcgctatt cacaaccccc gagtggatca agcgtacgcc
751 catcgactgt ttcttgttct gtcttcgcgt tatccctatc ttacataggt
801 ttggtgtggc catatcactc ctttactggt cgtgtgttgc tgctctgaat
851 tttcctgctt ttatggcttt cttatttaag cgtcagtttg ctaagtattt
901 agctcactct tttgctaaac actccatcta ctttatattt ttaactataa
951 ttgctatttt atggtctttt cgcacttttg cttctcaaaa accaaaaata
1001 gtgcttcagg ctaggagcac agcagaaaaa gagaaaaagc ttatgatgat
1051 tctagctagt gtcgttggga tcacttatct cttcgattat gacatagcag
1101 aaactctcgg gaattgtcta cataaaataa gccgtctatc ctcatatctt
1151 ctcgacgacc atcaaggcat cgcatcacga atgtttggag cgagctatgg
1201 gcttcaggct ggcgatagtg ctgaggatgc agttacaacg ataatcagcg
1251 acctactgtc tgtcactttt aaaattgtgg acgaagacgc atcacagggc
1301 accgtggagg atgcatctga gacaaccttt cacagttggg ttggtgttaa
1351 cacacttgca ggtcgcaata tgtcaagacc actccagtat gacgtcaata
1401 aaacgtatgc actcacacct caaaatgtcc agctccaagc gcgagctatg
1451 gcagacgcta acaactgctg gtcaatggtt gttggtcaca caggatctgg
1501 aaagtcaaca tacttacctg tgcagtactc caattactta tccaccaaga
1551 gtgataggcg acagcagatt cttatctgcg agccaaccca ggctgccact
1601 gagaacgttt gcgctggcgt tgctgctaat cttggcaggg ctgtttacgg
1651 gcgccatgag ggtcggtcca gaatggggga tcattgcatt caagttatga
1701 cgtatggttc cgcgctccag tgccatgcta tggaccctag cttcatatca
1751 actttcgacg caatttttct tgatgaagca cacgacgtca aagagcactc
1801 tctagtcttt gagagcattt gtgatacatt taaatccgtt cgaaagttct
1851 atgtttcagc tactcctaga gatggaagtg tatgtcctga agcagctagg
1901 aaatatcctt tacatgtgga aactagcgtt tgcgattcgt accggaagtt
1951 cattgcagct cagggtgggg gagatttgct ggacatctca aaacacgaca
2001 cagccttagt ctttctagca ggacggcctg agtgtattaa agctgctaat
2051 gcctggaatg ctagtgtcac cggtgagaag cgtgcctttt ctttgtcgag
2101 cgacaacttt gctaccgact tctcaatgct caccgagagg ctcaaaacac
2151 acaaaaccat catcttcacc acgaacataa ttgagacagg tgttactctt
2201 agcgttgatt gtgttgttga tttcggccat acgatgcgcc catgtttgga
2251 tctcaatcaa aaatcattac gtcttgatcg acgcagagtg acgcgaaacg
2301 aaagacagca gaggattggg cgagcaggtc ggcttaaaga cgggtacgcc
2351 atagtgtgtg gagatgttga taaagctgtg aatgtcatct ctcctgatgt
2401 tctttacggt gccgctcttc tgagctttaa acacaatgtg cctttctaca
2451 tgaacgaaac atttgagagt tcctggttgg agggtgtcac aaaggcacaa
2501 gctgacacaa tgacaatatt caagcttcct atatttctaa cacgagatct
2551 cattaatgca gatggatcag ttgctaggga gtttctcgat gttttaaaga
2601 agcatcaatt cacaacaagt gacataaagc aagcaccaag tgtcacagcc
2651 aaacatatct tcccaacttg ggcttcatac ttctctctcc atcaggcgct
2701 tcattatggt gatgacaagg atgagatacc acacgagttg cgatatgcgc
2751 gcgttccttt ctccgtcaca actttgagca aatttgattg gccagcctta
2801 gctcttgcat gcgagaaaca tagagcttcc atgtcaaatg tgtttgctgg
2851 cattgaggaa cccgcacgcg ttgttactct acaaacaaat cctgcgaaca
2901 tacaagcgag catcacacat ttaacgcata tgagtaagaa ctataaaact
2951 cttattgaga acaaccagca cgtgcgtcaa tccatgatga cgaatgtcat
3001 gtttaagtgg ttctcttcca ctcgcatcac taaagatctt gataggaact
3051 tgcgtagatg cacggataac ctctcggttg tcgaggccac gcttagctca
3101 ctcagacaaa tcttagctgg caacacgcag gttcatgcaa cgccgcacat
3151 gcagagcact cttgaggata ttattgaact ccaggctagc gacacactta
3201 cggaagaaag cttagcaaac gcacttggca tctttgttcc aaagtgcaac
3251 ctctttctgc tgctagctac caaaggtttc aagcttgtgt acgttgtttg
3301 catcttactt cttgtgaacc ttgtttatac tggtcttcgc aagtggcgcg
3351 agcatctcaa gcaaaaagga agtgacgaaa tcctaactaa cacaatgcca
3401 gttagtgaag gaggcgaaat tcttgctgag gttatgaaaa tggagcccaa
3451 aatgagaaag aacatcaaga gggatatgga tgcagctgtt gagagcaaac
3501 tatgtggttt cacctttgtt tttccagatg atgataaaat tggccttgaa
3551 ggcaagggga acaaataccg ccctcgcgaa gacgctcgcc tgatgtactc
3601 cactagagag gacgccacct ttgacgcctg gaatgagaaa gcgaaggaaa
3651 gacgtaagaa ggtaaccgac aaagctgagc cagagcttcg gcgagcctac
3701 gagaagagac catacttcaa tttctacgac cttcaaacag atagcaacat
3751 tctggaagct attttctaca ccactgaagg cgatgagttt ttccgaacag
3801 cagaccctaa taaggacatg aacttggttg ctgataaact acgctccttt
3851 ctcgatacaa agcttgttgt tggacaccat cagcggaagc tactagaaga
3901 aacagctgcg gttgttatta gggatacaaa gggaactgtg cacaacatgg
3951 aaatttcaca gcatgatcca gattttctga agcagaatgg gtccggcaaa
4001 gttgggtatc cagaacaccg aggacagttt cggcaggaag gagttgccat
4051 cacagcggat tacgatcttg aagctgagtt tggcgccgac accgatgaaa
4101 taacgcttga ggcctctact ggaattttat tgtcacaagt tggggtcgat
4151 gttgcaactc gagttggaag aatttgcatt ggcactttca atatgaactg
4201 ttacttctat agcgactgga ttctagttcc aggacacctg caagacagat
4251 ctggcaacgt aacaattcaa ttccctgacc aaacagtgca aaccacaact
4301 gacgcactca acgcaaatgg tgtgaaacga ttctatggat tagatgtgat
4351 agcaattcgt cgccctgctg ctttgcggcc tcgcaccaag ttggtcaaag
4401 cttttgctat tgaggaacca