Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus gene for polyprotein, genomic RNA, isolate TZ2

ACC No: AJ539132

Dated: 2003-10-31 | Length: 1814 | CRC: 1835388313

                !!NA_SEQUENCE 1.0
ID   SPO539132  standard; genomic RNA; VRL; 1814 BP.
XX
AC   AJ539132;
XX
SV   AJ539132.1
XX
DT   01-APR-2003 (Rel. 75, Created)
DT   31-OCT-2003 (Rel. 77, Last updated, Version 2)
XX
DE   Sweet potato feathery mottle virus gene for polyprotein, genomic RNA,
DE   isolate TZ2
XX
KW   coat protein; CP; NIb protein; nuclear inclusion body protein; polyprotein.
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1814
RA   Mukasa S.B.B.;
RT   ;
RL   Submitted (28-JAN-2003) to the EMBL/GenBank/DDBJ databases.
RL   Mukasa S.B.B., Plant Biology, Uppsala Genetics Centre, Box 7080, Uppsala,
RL   SE-750 07, SWEDEN.
XX
RN   [2]
RA   Mukasa S.B., Tairo F., Kreuze J.F., Kullaya A., Rubaihayo P.R.,
RA   Valkonen J.P.T.;
RT   "Coat protein sequence analysis suggest occurrence of distinct strains of
RT   SPFMV in Uganda and Tanzania";
RL   Virus Genes 27(1):49-56(2003).
XX
DR   GOA; Q80MW1.
DR   SPTREMBL; Q80MW1; Q80MW1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1814
FT                   /country="Tanzania:Bagamoyo"
FT                   /db_xref="taxon:12844"
FT                   /mol_type="genomic RNA"
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /isolate="TZ2"
FT                   /strain="EA"
FT                   /specific_host="Ipomoea batatas cultivar Karota"
FT   CDS             <1. .1593
FT                   /codon_start=1
FT                   /db_xref="GOA:Q80MW1"
FT                   /db_xref="SPTREMBL:Q80MW1"
FT                   /product="polyprotein"
FT                   /protein_id="CAD62247.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANG
FT                   DDLLLAVRPDTAHLLDKFSECFSELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKL
FT                   EPERIVSILEWDRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELAR
FT                   NGKAPYIAETALKALYTGVQPNASELSAYTRVLKEMYDDSMLQENDLEVYHQSNERTEF
FT                   KDAGANPPAPKPKDIPPPPTITEITDTEDPKQAALKAARAKQPAVIPESYGRDTGKERE
FT                   SIVGTSSKGVRDKDVNVGTVGTFVVPRVRMNANKKRQPMVNGRAIINFQHLSTYEPEQF
FT                   EVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDG
FT                   NEQVTYPIKPLLDHAVPTFSQIMTHFSDVAEANIEMRTRTKAYMPRYVLQRNLTDMSLA
FT                   RYAFDFYELHSTTPARAKEAHLQMKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVT
FT                   RNIHNLLGMRGVQ"
FT   mat_peptide     <1. .645
FT                   /note="NIb"
FT                   /product="nuclear inclusion body protein"
FT   mat_peptide     646. .1590
FT                   /note="CP"
FT                   /product="coat protein"
XX
SQ   Sequence 1814 BP; 565 A; 342 C; 431 G; 476 T; 0 other;

AJ539132  Length: 1814  November 11, 2003 09:07  Type: N  Check: 5759  ..

       1  gggaataaca gtgggcagcc atccactgtg gttgataata cacttatggt
      51  tgtgttagca gttcactata cactgttgaa actaggaatc caagaaagcg
     101  agtttgataa atgctgtgtc tttttcgcaa atggcgatga tttattgttg
     151  gcagtgaggc cagatacagc ccatttactg gataagttta gcgaatgctt
     201  ttctgaatta ggactcaatt atgacttttc atcgcgaaca aataagaaag
     251  aagatctatg gtttatgtca cactgtggcg tgaaacgtga tggaatattt
     301  attccgaagt tggagcctga aaggattgtt tcaattcttg aatgggatcg
     351  ttcacacgag ccaattcatc gactggaagc aatatgtgcc gctatggtgg
     401  aatcatgggg ttatgatgaa cttcttcatc atattaggaa attctatgca
     451  tgggttttgg accaagcccc atacaatgaa ctagcacgaa atgggaaagc
     501  accatatata gctgaaactg cactcaaagc actctacact ggtgttcaac
     551  ctaatgcttc tgaattgagt gcatatacga gagtactcaa agaaatgtat
     601  gatgacagta tgctccagga gaatgatttg gaagtatatc atcaatctaa
     651  tgagcgcact gaatttaaag atgcaggagc gaaccctcca gcccctaagc
     701  ctaaggacat tcctccacca cccacaataa ccgagatcac tgatacagag
     751  gacccgaagc aggcagcttt gaaagctgca cgagcaaagc aacccgcagt
     801  cattccagaa tcatatggac gagacacggg caaagaaagg gagtcaatag
     851  tggggacatc atcaaagggt gtgagggaca aagatgtaaa tgttggcacc
     901  gttggtacat ttgtcgtgcc acgtgtcagg atgaatgcaa acaagaaaag
     951  gcaaccaatg gttaatggaa gggccattat aaatttccag cacttgtcaa
    1001  catatgaacc agagcagttt gaggttgcaa acacccggtc gactcaagaa
    1051  cagttccaag catggtatga aggagttaaa ggggattatg gtgttgacga
    1101  cacagggatg gggatcttat tgaatggact aatggtttgg tgcattgaaa
    1151  atggtacatc cccaaatata aatggtgtgt ggacaatgat ggatggtaat
    1201  gagcaagtaa catatccaat taaaccatta ctggaccatg cagtgcctac
    1251  ttttagccag attatgacgc acttcagtga cgttgctgaa gctaacatag
    1301  agatgcgaac ccgtacaaag gcatacatgc caaggtacgt tctacaacgt
    1351  aatttgactg atatgagtct tgcgcgatat gcatttgatt tttacgagct
    1401  gcattcaact acacctgcac gtgctaaaga agcacattta cagatgaagg
    1451  cagccgcact taagaatgcg cgaaatcggt tgtttggttt ggacggaaac
    1501  gtctccacgc aagaagaaga tacggagagg cacacgacaa ctgatgttac
    1551  tagaaatata cataacctct taggaatgag gggtgtgcaa taggacatcc
    1601  tctgcactgt agcttatact tatgtcattt ttagtatgcc tttaatttaa
    1651  attcgtgtct ttcagtcccg aaggagatgg ttgaatgcat aacatggtgg
    1701  gattatatct cggttattgc atttgagaag tcacctttct attacgtatc
    1751  ataagggact cttaaaagtg aggagtacct cgtaagaaaa gcctttttgg
    1801  ttcgtgatcg agcc