Sequence of DPV Barley mild mosaic virus
Barley mild mosaic virus gene for polyprotein, isolate UK-L, genomic RNA
ACC No: AJ544266
Dated: 2004-08-13 | Length: 7262 | CRC: 1825976988
!!NA_SEQUENCE 1.0
ID BMI544266 standard; genomic RNA; VRL; 7262 BP.
XX
AC AJ544266;
XX
SV AJ544266.1
XX
DT 13-AUG-2004 (Rel. 80, Created)
DT 13-AUG-2004 (Rel. 80, Last updated, Version 1)
XX
DE Barley mild mosaic virus gene for polyprotein, isolate UK-L, genomic RNA
XX
KW 6K1 protein; 6K2 protein; coat protein; NIa protease; NIb polymerase;
KW P3 protein; polyprotein; VPg protein.
XX
OS Barley mild mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Bymovirus.
XX
RN [1]
RP 1-7262
RA Adams M.J.;
RT ;
RL Submitted (14-FEB-2003) to the EMBL/GenBank/DDBJ databases.
RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research,
RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN [2]
RA Kanyuka K., McGrann G., Alhudaib K., Hariri D., Adams M.J.;
RT "Biological and sequence analysis of a novel European isolate of Barley
RT mild mosaic virus that overcomes the barley rym5 resistance gene";
RL Arch. Virol. 149(8):1469-1480(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .7262
FT /country="United Kingdom:Lincolnshire - Rothwell"
FT /db_xref="taxon:12466"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Barley mild mosaic virus"
FT /isolate="UK-L"
FT /segment="RNA1"
FT /specific_host="Barley"
FT 5'UTR 1. .148
FT CDS 149. .6925
FT /product="polyprotein"
FT /protein_id="CAD66658.1"
FT /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFLV
FT LSPAHIAKLNKLLTEESTRCALLAQNCETIEALAVVRQALQGVTLRFGDNGMEKGWLHM
FT MKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIEGCERSVNHLTTFQFAREYGLS
FT TTYFEKLSNIGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCIWFLC
FT CCWSPARWCFNSAVFIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAICAVCCV
FT HLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADALSNNLHKISRLVNLFLDDN
FT RGFATPALDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDDEDATQDDAIYDSDGLQT
FT FKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELSASMAQEAKQWSQVVGHTGSGK
FT STRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGRHEGWSNLGD
FT KTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQEVTNIRKFYVS
FT ATPRDGKKCPEAVRRYEIKTVKSECSSVDTFVRSQEKTNSLYVLEHDTVLVFLAGKAEC
FT DRAASNWNKLYSTNMYAYSLTGDNFTMAYEKIVTEMLTKRTIVFCTNILETGVTLNVDC
FT VVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGHAICIGNPETRHDLV
FT PPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKAQASVMTQFKLSPFLMRDIVRDDG
FT AIPLSLHKILKDYTHRNTDLVGTKLSVMSHVYNSWPLYRTVHQSIFRGDSNVPQTLRYA
FT RVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDSSSTSRIINLQIGKMHIVNSMEEVK
FT ININSYQRSAENLRSVKDSFESSIFRTKLLRGNPTGKITKRIETLLDNVRVLQQIHAKL
FT EMIAYSGGEKINMDKKSVDELNEIVELQSKNSLTAEELARILHLTKPTSTFFNLFAERG
FT RQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDEVRNKI
FT NKKFKERSTRFSNDSKPETSSKYRNLKQEFVNFYDLKTDANVLQAVFTAMDGAVLLQTE
FT NPMADIGHVNRLLQDHFEDSESQAVHEGLNTMVKCHLTMKDGRQFELDMEQHGPETVAK
FT LGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGMTMKPMSSFTIDSAKMVGFIKTA
FT KDTLNCILYGDWIIAPAHIQQGEGDITFIFQHVQFTTTTERLASYGIRQFKGLDLVVIR
FT RPQQIRAVKKDMRASILDTPTEIQMLYLSTKGGKYQVSTSAVCFPHYNNRWGHVISTAE
FT GMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPWIFDWK
FT FCGYTTKPRNMQSAPSTLERLNINATGFGFKLDAQEIKPAMLRSTESFSREFPDTQFKL
FT IGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKDLKKYD
FT RPPHANVFCQDTLTKAKHKMISILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLYHGKKI
FT DIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFTAAPIT
FT SLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPGWTHGSGDGSRFD
FT SSIDGFLFDVIKDIRKHFMDTEHHKELDTIYEEIVNTKICLANGLVIQKNCGNNSGQPS
FT TVVDNTLALMTAFLYAYARLTGDHAFELMDENFIFVCNGDDNKFSMSPSFMAKFGCDFS
FT PFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLH
FT AYLSGIAALFESFNTPKLFNLVHTYLLWLVTEHEEELFSMMELKDMFMPLPTREQIALL
FT HYVGTEPIVEETFLQAGHEEPDPIVPPVPDTDLTNMAAAPPENRRSRAVIPRGTSDWSL
FT PEPKMRTLGFKSKINIETLANVPDGYMNTFASVATESQRRKWEEAARGDFGITDDEKWE
FT KLLIAACIYFADNGTSPNFDEELTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCY
FT SIETKLMFVKLRRVPHWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTS
FT NSLLTSEQTNMRTTETRRRNDYDGHEALLR"
FT mat_peptide 149. .1024
FT /product="P3 protein"
FT mat_peptide 1025. .1225
FT /product="6K1 protein"
FT mat_peptide 1226. .3199
FT /product="P3 protein"
FT mat_peptide 3200. .3391
FT /product="6K2 protein"
FT mat_peptide 3392. .3928
FT /product="VPg protein"
FT mat_peptide 3929. .4567
FT /product="NIa protease"
FT mat_peptide 4568. .6169
FT /product="NIb polymerase"
FT mat_peptide 6170. .6922
FT /product="coat protein"
FT 3'UTR 6923. .7262
XX
SQ Sequence 7262 BP; 2047 A; 1928 C; 1602 G; 1685 T; 0 other;
AJ544266 Length: 7262 August 17, 2004 10:32 Type: N Check: 5118 ..
1 aaaaataaaa ctccactcca acccaataca aacaacgaac aacaaacaac
51 gaatttgcaa cccaccaaag caacattgcc cgctagtagc aattcaacca
101 aactcagcaa caaatcaccc ctcgaccaaa cgaactctga ccatcgatat
151 ggaggagttc attcctgaag tgttctacca gaaccaggtt caaagtctca
201 agaagattct taaatcctgg aaacgcgaca cttctattta cgcgtatctt
251 gctcgcgagc aagaggtcct agccttcctt gtactgagtc ctgcacacat
301 tgccaaattg aacaaactac tcactgagga gtctacacga tgcgccctac
351 ttgcccaaaa ctgtgaaacc atcgaagctc tggccgttgt gcggcaagcc
401 ctgcagggtg tcacgctacg ctttggtgac aatggcatgg agaaaggctg
451 gctgcatatg atgaaagcac ttgatgcgtg ccttgacgaa agcttcagcg
501 agaatgccgc cgcactcaag aaaagcatcc aggcggtcgg tcacaagctt
551 atcgcagcaa aaaaccgcat cgaaggttgc gagcgatctg taaatcacct
601 tacgacgttt caatttgctc gcgaatatgg cttaagtact acatacttcg
651 aaaagttgtc caatatcggt gggcatattc gaagttttgt gtggtccagc
701 gactcaggag aaattttccc aaagctaaaa agatcatcac gtacgaggcg
751 catctcgaca ttcacgagct actactgggg tgaattttgg tgcaactgca
801 tctggttcct ctgctgctgc tggtcccccg cacgctggtg ctttaattcc
851 gcagttttca tatggagctt gtgtggtgtt ttaaacttat ctatgattgt
901 tttacagttt gctcttaagc gtcactttgg tagatactat tttcgataca
951 taatgtctgg tgtcctagct atttgcgccg tttgttgtgt tcatcttaaa
1001 aacagaaaag ggcctatatt gcaagcctcc caaaaagata agcgttttat
1051 tggcatttta gctttctgca ttactgttat atacatgttt gatgtcgatc
1101 ttgccgacgc gcttagtaat aatctccata agatctcccg ccttgtaaat
1151 cttttccttg atgacaaccg tggatttgca acacctgccc tcgacaatct
1201 aaccgacttc acaacaatcc ttcaaagtgg aacatcaagt gacgacctga
1251 agattgttca agacacgttg gctgtagttt tgcaggtcga tgacgaggac
1301 gcaactcagg atgatgccat atatgattcc gatgggcttc agacttttaa
1351 acaatgggtc tcacacaacc agctagccgg aatgcaactt gcacgcccac
1401 tacaataccc ttgctcgaac acttacggtc taaccgcgga caacgttgca
1451 gaactatccg ccagcatggc acaggaagca aagcagtggt cacaagttgt
1501 tgggcacact ggttccggga agtccacacg actaccaact gcatacgcca
1551 actgcttgaa aggcttggcc ggacgaaaga aaaatgtcct cgtttgcgaa
1601 cccacaagag ccgccactgt caatgtaact agcggtattt ctcagaattt
1651 tggcaggctc gtttacgggc ggcatgaagg ctggagcaac ctcggcgata
1701 aaacaataca ggtcatgaca tatggttccg cacttgcagc atggaaagtc
1751 gacaacaaat tcctgagcca gttcgacgca gtatttcttg acgagtctca
1801 ccttataacc acgcacgccc ttgtctttga aagcatttgc caggaggtta
1851 caaacattcg caagttctat gtatcagcca caccccgcga tggtaagaag
1901 tgtccagagg ccgtgcgcag atatgaaatc aaaactgtga aatctgagtg
1951 cagtagtgtc gacacttttg ttcgaagcca ggagaaaaca aactcgcttt
2001 acgttctcga acacgacacc gtcctcgttt ttctcgctgg aaaggccgag
2051 tgtgatagag cagcaagcaa ctggaacaag ctctactcaa ccaacatgta
2101 cgcctactct ctaacaggtg acaacttcac aatggcatat gagaagattg
2151 ttacagaaat gctcactaaa cgcaccatcg ttttctgcac gaacatcctg
2201 gaaaccggcg tcacccttaa cgtggactgc gttgtcgact tcggattcac
2251 tatgcgtccc gaactcgatc ttgttgataa atcgctaacc ttgatgcgac
2301 gccgagtcac cgagaacgag cgtgcacagc gcattggacg cgcaggaaga
2351 ctcagaactg gacacgcaat ctgtattggc aatcccgaaa cgcgccacga
2401 cttagtcccg ccagaaacac tctacgaagc agctcttctt agcttcgtgc
2451 acggcgtgca attctacatc aatgaacatt tcgaaaacgc ctggattgaa
2501 ggtgtcacaa aggctcaagc ctccgtcatg acacaattca aactttctcc
2551 tttcctcatg cgtgatattg ttcgcgacga tggtgcaata ccactatcac
2601 tccacaagat actcaaggat tacacacacc gcaataccga tctggtagga
2651 actaaactct ccgttatgtc acatgtttac aattcatggc ctctttaccg
2701 aacagtgcac caatccatct tccgtggaga ttccaatgtt ccacaaacgc
2751 tcagatatgc acgcgtcccc tttaatgtta gcactgctca cgattttcca
2801 tgggaagact tcgcacaggc gtgccttgaa ttccagccac gcgtccttca
2851 ggtcttcagt gacagcagca gcacttcgcg cataatcaac ctgcagattg
2901 ggaagatgca catcgtcaac tctatggaag aagttaagat aaacataaac
2951 agctaccagc gctccgcaga aaacctacgc tcagttaaag acagcttcga
3001 aagctcgatc ttccgaacaa aactgcttcg tggaaaccca actgggaaga
3051 taactaagcg catcgagact ctccttgaca acgtacgagt gctgcaacag
3101 atacatgcga aacttgagat gattgcatac tcaggtggag agaaaatcaa
3151 catggacaag aaatcagttg acgagctaaa tgagattgtc gaactccaga
3201 gcaaaaactc actcactgcc gaggaactgg cgcgcatatt gcacctgaca
3251 aaacccacct ccaccttctt caatctgttt gctgaacgtg gtcggcaaat
3301 gctcgtcact ctcctggtta tggttgccgc ctcactcatg tatctcgttt
3351 tctgggtttc tcccaggaaa caggacgaca ttaccattga ggggaaaggc
3401 agggcataca accgtgataa gcgcatgggg tacgactcct acgaggaaga
3451 cgaagttcgc aacaagatca acaagaagtt caaagagcgc agcacaaggt
3501 tctccaatga ctccaaaccg gaaacaagct cgaaataccg caatctgaag
3551 caagaatttg ttaacttcta tgatctcaaa accgatgcga acgtgctaca
3601 agccgtgttc actgcaatgg acggggccgt ccttcttcaa accgaaaatc
3651 caatggcaga cattggccac gtcaatagac tgctgcagga ccactttgaa
3701 gacagtgaga gccaggctgt gcatgagggc ctcaacacca tggtcaagtg
3751 ccacctaacg atgaaagatg gaagacagtt tgagctcgac atggaacaac
3801 acggtcccga aactgtcgcc aaacttgggg gcgaggttgg tttcagaatg
3851 aacagagacg acttacgtca agttggagcc acacgataca tcaacccaag
3901 agcacagaca tctgcagcga cgctcgaagg catgaccatg aaacccatga
3951 gttctttcac cattgacagc gcaaagatgg ttggcttcat caagaccgca
4001 aaagacacac tcaactgcat cctttacggc gactggatta tagctcctgc
4051 gcacatacag cagggcgagg gggacataac attcatcttc cagcacgtac
4101 aattcacgac cacaactgag cgtttggcta gctacggcat tcgacaattc
4151 aaaggtcttg accttgttgt catccggcgc cctcagcaga tacgcgcagt
4201 caagaaggac atgcgtgcta gcattctcga cacacccact gaaatacaaa
4251 tgctctactt gtccactaaa ggtggtaagt accaagtgtc cacgtccgct
4301 gtgtgctttc cacactacaa taaccgatgg ggacacgtca tttcaacagc
4351 agaaggcatg tgcggctgca ttgtgttcaa tcccaccacg aaccacatcg
4401 ttggaatcca cgtctcctac aacgacacgc gcagaagaaa tgagtttcaa
4451 gctttcacaa gtgacgttct gacaacgatt aatgcacccg gacacgagat
4501 acctttcagc ccatggatct tcgactggaa gttttgtggg tacacaacaa
4551 aaccacgaaa catgcaaagc gcaccgagca cactcgagcg actcaacatc
4601 aatgccacag gctttggttt caagctcgat gcacaggaga ttaagccagc
4651 catgcttcgt tccacagagt cgttctccag ggagtttcca gacacacagt
4701 ttaaactcat tggggaagtg aagaaaggac tcatcgacaa acacacaatc
4751 acaggagaga acccatactt ccttgaattc ctgaacacat tcaaaccata
4801 ccaatgggtg caggccttca tggacgagta cgcaccctcc atccttgcct
4851 atgatgcgta ttttaaagat ctgaagaaat atgataggcc accacacgca
4901 aatgttttct gtcaggacac attaaccaaa gctaaacaca agatgatcag
4951 catcctcgag gaagcaggca tgggaaggac cctagtacga accaccgagc
5001 aggtcttgct tgacatggcg tggaccacct ccggtggacc cttgtaccat
5051 ggtaagaaga tcgacattgt gcaacacttg tctgatgacg agcttgtaca
5101 gttcagtgag gcctgccaac aggctctcat cactggaacg ctggatggag
5151 tctggaacgg atcactcaaa gccgagctgc gctcttcgca gaaaatcctc
5201 gaacggaaaa cccgcgtttt cactgctgca cccataacga gcctcattgc
5251 gatgaaatat tacgtggatg atttcaacaa acagttctat aaaacccatc
5301 tcaaagcacc gcacacagtc ggcatcaaca agttcaaccg cggatggcag
5351 aatctgtatg agaagctcaa caaacctgga tggacgcatg ggagtgggga
5401 tggttccagg tttgacagtt ctattgatgg attccttttc gatgtcatca
5451 aggacattcg aaagcatttc atggacacgg aacatcacaa agaactcgac
5501 acaatctacg aagagattgt caacacgaag atatgtctgg cgaacggcct
5551 ggtcattcaa aagaattgcg ggaacaacag tgggcagcca agcactgttg
5601 tggacaacac actcgcactc atgaccgctt ttctctacgc atatgcccgg
5651 ctcactggag atcacgcctt cgaactcatg gacgaaaact tcattttcgt
5701 ctgcaatggt gatgacaaca agttttccat gtcacctagc ttcatggcga
5751 agtttggatg cgatttctcc ccattcctct ctgagctcgg gctaacctac
5801 gaattcgatg aagcaactga agacatctgc gaaaacccct acatgtcctt
5851 gacgatggtc cgcacctcgt ttgggattgg tttctctctc tccatcgagc
5901 gcatcgttgc aatcttgcaa tggagtcgcg ctggtggagt cctgcatgcc
5951 tatctctctg gcattgccgc tcttttcgaa tccttcaaca cacccaaact
6001 cttcaatctc gtgcacacat atctcctttg gctcgtcaca gagcacgagg
6051 aggaactctt ctccatgatg gaactcaaag acatgttcat gcccttgccc
6101 actagggaac aaatagcctt gctgcactac gttggaactg agcccatcgt
6151 ggaggaaaca tttctgcaag caggacacga agaaccagac cccatcgttc
6201 ccccggttcc cgacaccgat ctaacgaaca tggctgccgc accacccgaa
6251 aacagaagat cacgcgccgt catcccccgt ggaaccagtg actggagcct
6301 gcctgaaccc aaaatgcgaa cactgggttt caagtccaag atcaacatcg
6351 aaacacttgc caatgtcccc gacgggtata tgaacacctt tgcatccgtt
6401 gcaactgaat cgcaacgtag gaaatgggag gaggccgcac gtggcgattt
6451 cggcatcact gacgatgaga aatgggagaa gctgctcatt gctgcttgta
6501 tatatttcgc agacaatggc acctcaccga atttcgacga ggaactcact
6551 atggaggtca atggcggtct caactccatt aaagagtacc ccgttcgccc
6601 cttcgtcgtt agagccaaaa agatttctac gctgcgtaga atctttcgct
6651 gttactccat cgaaacgaag ctcatgttcg tgaagctgag gcgcgtgccg
6701 cactgggcca taaagcacgg atgcctcgat gagatcgtct ttgatttcat
6751 gatccccgac cagttcacct ctaggactgc gcttgaaaca ctaaagcaga
6801 ccaagcttgc tgccattggt gttggcacaa gcaattctct cctcacctcc
6851 gagcagacga acatgaggac cactgaaacc cgacggcgca atgactacga
6901 tggtcacgag gcgctcctcc ggtagatctc tcatgcactc acatttcctt
6951 ttaagcaatg catttcaata cgcttttaat tatatcaagc gtcaagaatt
7001 tctcccgctt gcagttaatc cttacagggt ggcactttgt gttatgcaat
7051 ggaaaattca gtgacgcaat caaccatcat tggttggtga caacgcagta
7101 ctttctttat ttcacatcaa gcgaccagca catcgcccgc ttacagctaa
7151 tcctacctga gggtggcact ctgtgttatg taatggaatg tgcaatctcg
7201 caaccaaccg tcattggttg atggtgcggc caacacccgc gctcttgtat
7251 accggaaagg tt