Sequence of DPV Cardamom mosaic virus

Cardamom mosaic virus partial gene for polyprotein, 5' end, genomic RNA

ACC No: AJ550378

Dated: 2003-03-19 | Length: 1176 | CRC: 2113443287

                !!NA_SEQUENCE 1.0
ID   CMO550378  standard; RNA; VRL; 1176 BP.
XX
AC   AJ550378;
XX
SV   AJ550378.1
XX
DT   19-MAR-2003 (Rel. 75, Created)
DT   19-MAR-2003 (Rel. 75, Last updated, Version 1)
XX
DE   Cardamom mosaic virus partial gene for polyprotein, 5' end, genomic RNA
XX
KW   NIa protease; nuclear inclusion protein A; polyprotein; VPg.
XX
OS   Cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus; Maclura mosaic virus.
XX
RN   [1]
RP   1-1176
RA   Usha R.;
RT   ;
RL   Submitted (18-MAR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL   Madurai, Tamil Nadu-625021, INDIA.
XX
RN   [2]
RA   Jebasingh T., Jacob T., Usha R.;
RT   "Characterization of the NIa gene of the Indian isolate of cardamom mosaic
RT   virus";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1176
FT                   /country="India:Karnataka, Yeslur"
FT                   /db_xref="taxon:104637"
FT                   /mol_type="genomic RNA"
FT                   /note="infected cardamom leaves"
FT                   /virion
FT                   /organism="Cardamom mosaic virus"
FT                   /isolate="Yeslur"
FT                   /specific_host="Elettaria cardamomum"
FT   CDS             1. .>1176
FT                   /product="polyprotein"
FT                   /protein_id="CAD79433.1"
FT                   /translation="MKGKHLNRDKRNVAIQETFDEAYTAIRGDEDFERVRSRRKGVKER
FT                   DVAPVMRYAQQKRPFLTLYDLTLDEDITHAVFADHNNQAFYETANPLANLKDVEQHLQN
FT                   HKNKGEVIFWSDYADDTIFMTITERDGTVQKVRLTPHSLSGEQDMADSRALVNEGQYRQ
FT                   TGDVEILKQPQQTLEIDTRLSNNNTNLEIMNMIGHVQIGEGRLHCLLYKDFLIMPAHIM
FT                   QKSLPLTISFKHYTMTISELPEAYAFEGFDLLCIKRPSQLAPVKCSASLATAQEGMIVQ
FT                   MLHKKFLTNKPIITVTAPIHETSELRWAHQIPTAVGMCSAPVVDTQTGKIVGIHVMGDS
FT                   FRKHNVFETFPCDALEILNTNDKKIHQRYFSQKLKVWSFIPETHGYDPRKIQ"
FT   mat_peptide     1. .535
FT                   /product="VPg"
FT   mat_peptide     536. .1176
FT                   /product="NIa protease"
XX
SQ   Sequence 1176 BP; 408 A; 242 C; 253 G; 273 T; 0 other;

 AJ550378  Length: 1176  April 1, 2003 09:32  Type: N  Check: 1741  ..

       1  atgaaaggga agcatttgaa tagagacaag cgcaatgtgg caatacaaga
      51  aacgtttgac gaagcataca ccgctattag aggggatgaa gattttgaga
     101  gagtgcggag taggagaaag ggtgtgaaag agagagatgt cgcaccagtc
     151  atgcggtatg cgcaacagaa acgaccattt ttgacgttgt atgatctcac
     201  acttgatgag gacataacac atgcagtctt tgccgaccac aataatcaag
     251  ccttttatga aactgcaaac cctcttgcaa atcttaagga tgttgaacaa
     301  catttacaga atcacaagaa taaaggcgaa gtgatatttt ggtcagatta
     351  tgcagatgat acaattttta tgaccataac cgaaagggat ggaactgtgc
     401  aaaaggttag gttaacacca cactcattga gcggagaaca agacatggcg
     451  gacagcaggg ctttagtgaa cgaagggcaa taccgacaaa caggtgacgt
     501  ggaaatctta aagcaaccac agcaaactct ggagattgac acaaggttgt
     551  ccaacaacaa tacaaatctt gaaatcatga acatgatcgg acacgtccag
     601  ataggagagg gccggttgca ctgtctgcta tacaaagatt tcctaataat
     651  gccagctcac atcatgcaaa aatcactacc tctcacaatt tcattcaaac
     701  actatacaat gacaatttca gagctaccag aagcttatgc attcgaagga
     751  tttgaccttc tttgcattaa gagaccatca cagctcgcac cagtcaaatg
     801  ctcagctagc ctcgcaacag cacaggaagg catgattgtt cagatgctcc
     851  acaagaaatt tttgacaaat aagcccataa ttactgtcac ggctccaatt
     901  catgaaacat ctgagttacg atgggctcac caaatcccaa cagctgttgg
     951  tatgtgtagc gcacctgttg ttgacacgca aactggaaaa attgttggaa
    1001  tacatgtaat gggtgacagc tttaggaagc acaatgtttt tgaaacattc
    1051  ccgtgtgatg ctttagaaat cttgaacacc aatgacaaaa agatacatca
    1101  gcgctatttt agccaaaaac tcaaggtctg gagtttcatc cctgaaacac
    1151  acggatatga cccaaggaaa atacag